Gene Information

Name : TSC_c04530 (TSC_c04530)
Accession : YP_004201638.1
Strain : Thermus scotoductus SA-01
Genome accession: NC_014974
Putative virulence/resistance : Virulence
Product : two-component response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 398877 - 399551 bp
Length : 675 bp
Strand : +
Note : -

DNA sequence : 
ATGGCACGGATTCTCTTGGTGGAGGATGATCCCCAGGTGGGGGAGCTGGTCAAAAGGTTTCTGGAAAAGGAGGGGCTTTT
GGTGGTGTGGGCCCGCACGGGGAGGGAGGCCCTGAAGCAGGCCTGGGAAGGGACCAAGCCGGATCTGGTGGTCCTGGATC
GGGGGCTTCCCGATTTGGAGGGCCTCGAGGTCCTCAAATCCTTGCGGGACCTGGATCCCTTGCTCCCGGTTTTGCTCCTA
ACCGGTAAGGCGGACGAGGATAGCCGGGTGGAGGGGCTATTAGAGGGGGCGGACGATTATCTGGGCAAGCCCTTCTCCCT
CAAGGAGCTTTTGGCCCGCATCAAGGCCCTCCTGCGCCGAAGCGGAAAGGAAGGGAGGCGGTATTTCGGTCCCCTGGAGC
TGGACCTGGAGGCCAGAAAGGCCTACCTGGACGGTCAGCCCTTGAAGCTTTCCGCCACCGAAGCCAACCTCCTCTTCGTC
CTGGCCCAGACCCCGGGAAGGGTGTACACCCGGGAGGAGCTTTTGGAAAGGGTTTGGGGGCCCGAGTTTGAGGGTTCGGA
GCGGGTGGTGGACGCCTATATCCGCCTTCTCCGCAAAAAGCTCAAGGATGACCCCCAGGCTCCCCGGTTCATTGAAACCG
TGGTGGGGATGGGGTACCGCTTCGTGGGCGAGTGA

Protein sequence : 
MARILLVEDDPQVGELVKRFLEKEGLLVVWARTGREALKQAWEGTKPDLVVLDRGLPDLEGLEVLKSLRDLDPLLPVLLL
TGKADEDSRVEGLLEGADDYLGKPFSLKELLARIKALLRRSGKEGRRYFGPLELDLEARKAYLDGQPLKLSATEANLLFV
LAQTPGRVYTREELLERVWGPEFEGSERVVDAYIRLLRKKLKDDPQAPRFIETVVGMGYRFVGE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 6e-18 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TSC_c04530 YP_004201638.1 two-component response regulator NC_012469.1.7685629. Protein 3e-29 44
TSC_c04530 YP_004201638.1 two-component response regulator NC_002952.2859905.p0 Protein 2e-28 42
TSC_c04530 YP_004201638.1 two-component response regulator NC_002745.1124361.p0 Protein 1e-28 42
TSC_c04530 YP_004201638.1 two-component response regulator NC_009782.5559369.p0 Protein 1e-28 42
TSC_c04530 YP_004201638.1 two-component response regulator NC_002951.3237708.p0 Protein 1e-28 42
TSC_c04530 YP_004201638.1 two-component response regulator NC_007622.3794472.p0 Protein 2e-28 42
TSC_c04530 YP_004201638.1 two-component response regulator NC_002758.1121668.p0 Protein 1e-28 42
TSC_c04530 YP_004201638.1 two-component response regulator NC_009641.5332272.p0 Protein 1e-28 42
TSC_c04530 YP_004201638.1 two-component response regulator NC_013450.8614421.p0 Protein 1e-28 42
TSC_c04530 YP_004201638.1 two-component response regulator NC_003923.1003749.p0 Protein 2e-28 42
TSC_c04530 YP_004201638.1 two-component response regulator NC_007793.3914279.p0 Protein 1e-28 42
TSC_c04530 YP_004201638.1 two-component response regulator NC_012469.1.7686381. Protein 2e-28 41
TSC_c04530 YP_004201638.1 two-component response regulator BAC0197 Protein 3e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TSC_c04530 YP_004201638.1 two-component response regulator VFG1389 Protein 5e-28 45
TSC_c04530 YP_004201638.1 two-component response regulator VFG1390 Protein 3e-26 44