Gene Information

Name : phoP1 (TSC_c03830)
Accession : YP_004201569.1
Strain : Thermus scotoductus SA-01
Genome accession: NC_014974
Putative virulence/resistance : Resistance
Product : alkaline phosphatase synthesis transcriptional regulatory protein PhoP
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 327701 - 328378 bp
Length : 678 bp
Strand : -
Note : -

DNA sequence :
ATGAGGGTTCTCCTGGTGGACGACGACCCAGCCCTCCTCGAGGTCCTGGGGGCCTACCTGAGGGGGGCTGGGTTTGAGGT
GCTGGAGGCAAAGGATGGGGAAAAGGCCCTGGAGCTTTTTCCCCGGGCCGACCTCATCATCCTGGACCTCATGCTGCCCA
AGCTGGACGGCTTCAAGGTCCTGGAGGAGGTGCGCCGGGAAAGGCCCGAGCTTCCCATCCTCATGCTGACCGCCAGGGGG
GAGGAGGAGGAAAGGGTTAAGGGGCTGGAGCTAGGGGCCGACGACTACGTGGTCAAGCCCTTCAGCCCCAAGGAGGTGGT
GGCCCGGGTCAAGGCCCTCCTAAGGCGAGCCGGCCTCAAGGAGGAGCTCTGCTACGGCCCCTTGCGCCTTCTTCCGAAGG
AGCGGCAGGCCTACCTGGAGGGCAAGCCCCTTCCCCTTTCCCAGCTGGAGTTTGACCTCCTCCTCACCCTGGCCCAGCAC
CCGGGCATGGTCTTCACCCGGGAAAGGCTCTTGGAAAAGGTGTGGGGACCGGACTTCCCGGGCATAGACCGGGTGGTGGA
CGTGCACATCGCTGCTTTGAGAAAAAAGCTCATGGACGATCCGGAAAACCCCCGGTTCATCGAAACGGTACGGGGGGTGG
GGTACCGCTTCCGGGAAGGCGATGCGCCTCTTCGCTAA

Protein sequence :
MRVLLVDDDPALLEVLGAYLRGAGFEVLEAKDGEKALELFPRADLIILDLMLPKLDGFKVLEEVRRERPELPILMLTARG
EEEERVKGLELGADDYVVKPFSPKEVVARVKALLRRAGLKEELCYGPLRLLPKERQAYLEGKPLPLSQLEFDLLLTLAQH
PGMVFTRERLLEKVWGPDFPGIDRVVDVHIAALRKKLMDDPENPRFIETVRGVGYRFREGDAPLR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
vanRB YP_008394254.1 DNA-binding response regulator VanRB Not tested Not named Protein 6e-31 41
vanRB NP_815956.1 DNA-binding response regulator VanRB Not tested Not named Protein 2e-30 41
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-24 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_002952.2859905.p0 Protein 3e-41 49
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_009782.5559369.p0 Protein 2e-41 49
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_002951.3237708.p0 Protein 2e-41 49
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_003923.1003749.p0 Protein 3e-41 49
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_007622.3794472.p0 Protein 2e-41 49
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_002758.1121668.p0 Protein 2e-41 49
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_009641.5332272.p0 Protein 2e-41 49
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_013450.8614421.p0 Protein 2e-41 49
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_007793.3914279.p0 Protein 2e-41 49
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_002745.1124361.p0 Protein 2e-41 49
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_012469.1.7686381. Protein 2e-40 46
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP HE999704.1.gene2815. Protein 6e-44 46
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP AE000516.2.gene3505. Protein 1e-31 46
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_012469.1.7685629. Protein 2e-33 44
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP BAC0596 Protein 3e-31 44
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP CP001138.1.gene2239. Protein 3e-31 44
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP CP001918.1.gene3444. Protein 1e-29 44
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP BAC0197 Protein 3e-26 43
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP AE016830.1.gene1681. Protein 1e-37 43
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP CP001918.1.gene5135. Protein 5e-24 43
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP BAC0533 Protein 2e-27 43
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP CP004022.1.gene3215. Protein 3e-31 43
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP CP000647.1.gene4257. Protein 2e-27 43
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP CP001138.1.gene4273. Protein 1e-27 43
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP CP001485.1.gene721.p Protein 8e-32 43
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP BAC0039 Protein 2e-30 43
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP CP000034.1.gene2186. Protein 2e-30 43
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_002695.1.916589.p Protein 1e-30 43
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP CP000647.1.gene2531. Protein 6e-30 43
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP CP000675.2.gene1535. Protein 9e-34 42
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_010410.6002989.p0 Protein 9e-33 42
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_010400.5986590.p0 Protein 6e-33 42
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_011595.7057856.p0 Protein 9e-33 42
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_002695.1.915041.p Protein 6e-27 42
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP CP000034.1.gene3834. Protein 6e-27 42
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP AF310956.2.orf0.gene Protein 2e-31 41
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP U35369.1.gene1.p01 Protein 9e-31 41
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP AE016830.1.gene2255. Protein 9e-31 41
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP AF162694.1.orf4.gene Protein 1e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP VFG1389 Protein 7e-30 47
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP VFG1390 Protein 1e-32 43
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP VFG0596 Protein 5e-25 41
phoP1 YP_004201569.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP VFG1386 Protein 8e-32 41