Gene Information

Name : TSC_c17350 (TSC_c17350)
Accession : YP_004202898.1
Strain : Thermus scotoductus SA-01
Genome accession: NC_014974
Putative virulence/resistance : Resistance
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1646529 - 1647182 bp
Length : 654 bp
Strand : -
Note : -

DNA sequence : 
ATGCGCCTTCTCGTAGTGGAAGATGACCCCCGGGTGGGCGCCCTGGTTCAGGAGGCCCTCGAGGCCGATGGGTACGCCGT
GGACTGGGCCAAGAGCGCCGAAGAGGCCCTGGGCCTGGTCCGGGCCTTTCCCTACGACCTGGTGGTCCTGGACGTGATGC
TCCCCGGGATGGATGGCTTTACCTTCCTTGAAGCGCTACGCCGCCAGCACAAGCTCCCCGTCCTTATGCTGACCGCCAGA
GACGCCACCGAGGACAAGGTGCGGGGTCTGGAGCAGGGGGCCGACGACTACCTGACCAAACCCTTTCACCTGCGGGAGCT
CCGGGCCAGGGTGCGGGCCCTTCTCCGGCGGGCCCACGGGGAAGCGGCCAACCTGGTGCGCCGGGGCAGGCTCACCCTGG
ATCTCGAGGGCAAGCGGGTCTACTGGGAAGGCAAGGAGGTGCGCCTGTCGGGCCGGGAGTACGCCCTTTTAGAGTTCCTG
GCCCTGAACGCTGGTGGCGTCTTCCCCAGGGAGGTGCTATTGGAAAAGGTCTGGGCGGGCGAAGAGGGGGTGGACCCCAA
GGTGGTGGACGTCTACATCTACCGCCTGAGGCAGAAGCTGGGACAAGGGGCCATTGAGACCGAGCGGGGCCTAGGTTACA
GCTTCCGGGAATGA

Protein sequence : 
MRLLVVEDDPRVGALVQEALEADGYAVDWAKSAEEALGLVRAFPYDLVVLDVMLPGMDGFTFLEALRRQHKLPVLMLTAR
DATEDKVRGLEQGADDYLTKPFHLRELRARVRALLRRAHGEAANLVRRGRLTLDLEGKRVYWEGKEVRLSGREYALLEFL
ALNAGGVFPREVLLEKVWAGEEGVDPKVVDVYIYRLRQKLGQGAIETERGLGYSFRE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 3e-24 44
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-27 42
vanRB NP_815956.1 DNA-binding response regulator VanRB Not tested Not named Protein 8e-26 41
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TSC_c17350 YP_004202898.1 DNA-binding response regulator BAC0308 Protein 5e-31 45
TSC_c17350 YP_004202898.1 DNA-binding response regulator BAC0487 Protein 1e-27 44
TSC_c17350 YP_004202898.1 DNA-binding response regulator BAC0197 Protein 1e-33 44
TSC_c17350 YP_004202898.1 DNA-binding response regulator NC_002516.2.879194.p Protein 6e-25 43
TSC_c17350 YP_004202898.1 DNA-binding response regulator BAC0083 Protein 2e-29 42
TSC_c17350 YP_004202898.1 DNA-binding response regulator BAC0125 Protein 1e-32 42
TSC_c17350 YP_004202898.1 DNA-binding response regulator AE016830.1.gene2255. Protein 3e-26 41
TSC_c17350 YP_004202898.1 DNA-binding response regulator U35369.1.gene1.p01 Protein 3e-26 41
TSC_c17350 YP_004202898.1 DNA-binding response regulator BAC0638 Protein 1e-26 41
TSC_c17350 YP_004202898.1 DNA-binding response regulator CP001138.1.gene4273. Protein 9e-16 41
TSC_c17350 YP_004202898.1 DNA-binding response regulator NC_002695.1.915041.p Protein 8e-16 41
TSC_c17350 YP_004202898.1 DNA-binding response regulator CP000034.1.gene3834. Protein 8e-16 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TSC_c17350 YP_004202898.1 DNA-binding response regulator VFG0596 Protein 3e-28 42
TSC_c17350 YP_004202898.1 DNA-binding response regulator VFG0473 Protein 3e-26 42
TSC_c17350 YP_004202898.1 DNA-binding response regulator VFG1386 Protein 3e-25 42