Gene Information

Name : GM18_3835 (GM18_3835)
Accession : YP_004200537.1
Strain : Geobacter sp. M18
Genome accession: NC_014973
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 4488168 - 4488932 bp
Length : 765 bp
Strand : +
Note : KEGG: gbm:Gbem_3622 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGATCACTAGCAGGATCCCCGCCATCGAGGTACGCCACCTCACCGTGAGCTACGGCACCCGGGCCGCCCTCCTCGACGT
CTCCCTCTCCATCGTGCCCGACCAGATGGTCGGGGTCATCGGCCCCAATGGCTCAGGCAAGTCCACCCTGGTCAAGGCGA
TGCTGGGGTTCGTGAAACCGGACGTGGGGGAGATCCTGATCAACGGCCAGGACGTGCAGAAGGCGATGGGGAAGGTGGCC
TACGTGCCGCAGCGCGGGGCGGTGGACTGGGACTTCCCGATCACGGTGCGGGAGGTGGCGCTGATGGGGCGTTACCAGCA
CATACCCTGGTACCGCGACGCCTCGGCTGCAGACCGCGAGGCTGCCATGGAAGCCTTGTCGCTGGTGCGCATGGCCGACT
TCGCCGGGCGCCAGATCGGCCAGCTCTCGGGCGGCCAGCAGCAGCGCGTCTTCCTGGCCCGGGCACTGGCCCAGGGCTCC
GACATCCTCCTGCTGGACGAACCCTTTGCCGGCGTCGACGCCGCCACCGAGCGGGCCATCCTGGACGTGCTGGAGCGCGC
CAAGGCGGCTGGGAAGACCCTGGTGGTGGTGCACCACGATCTGGCCACGGCGGCGGAATACTTTGACAACCTGGTCCTGC
TCAAGCAGCGGCTCTACGCCTACGGCCCGCCCGGCGCGGTGCTGCAGGAGGAACTCCTGAGCCAGGTCTACGAGGGGCGC
CTCAGGGTCTTCGCCGGCCTGATGGCCAAGGAAGGGGCGCGATGA

Protein sequence : 
MITSRIPAIEVRHLTVSYGTRAALLDVSLSIVPDQMVGVIGPNGSGKSTLVKAMLGFVKPDVGEILINGQDVQKAMGKVA
YVPQRGAVDWDFPITVREVALMGRYQHIPWYRDASAADREAAMEALSLVRMADFAGRQIGQLSGGQQQRVFLARALAQGS
DILLLDEPFAGVDAATERAILDVLERAKAAGKTLVVVHHDLATAAEYFDNLVLLKQRLYAYGPPGAVLQEELLSQVYEGR
LRVFAGLMAKEGAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 1e-45 45
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 8e-46 45
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 8e-44 44
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 3e-44 44
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 2e-44 44
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 9e-43 44
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 9e-43 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GM18_3835 YP_004200537.1 ABC transporter-like protein BAC0400 Protein 2e-47 50
GM18_3835 YP_004200537.1 ABC transporter-like protein BAC0350 Protein 1e-44 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GM18_3835 YP_004200537.1 ABC transporter-like protein VFG0526 Protein 1e-44 44