|
Name : GM18_1618 (GM18_1618) Accession : YP_004198360.1 Strain : Geobacter sp. M18 Genome accession: NC_014973 Putative virulence/resistance : Virulence Product : nucleotide sugar dehydrogenase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0677 EC number : - Position : 1964761 - 1966047 bp Length : 1287 bp Strand : + Note : KEGG: gbm:Gbem_1754 nucleotide sugar dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase ; UDP-glucose/GDP-mannose dehydrogenase dimerisation DNA sequence : ATGGGGCACGGACGCAAGATATCGGTGGTTGGGCTTGGCTACGTGGGGCTGCCGGTGGCGGTCGCCTTTGGCAAGGTGCG GCGCACCATCGGCTTTGACATCAGCGCGCGCAGGATCGAGGAGTTGCGCGCAGGCTGCGACCGGACCGGTGAGGTCTCCA CGGAGGAGCTGGTCGGCGCGGACATCTGCTACACCGACAGGATCGAGGTGCTGCGTGAGGCGGACTTCCATGTGGTGGCG GTCCCGACGCCGGTCGACCCGGCCAACCAGCCGGACCTCTCCCTCCTGACAGGCGCTTCGGAGACGGTAGGGAAGGCGCT CAAGAAGGGGGACATCGTGGTTTACGAGTCCACGGTGTACCCCGGGGTCACCGAAGAGATCTGCCTTCCCATCCTGGAGC GGGTCTCGGGGCTGAAAAGTCCGGAGGGGTTCACCGTGGGGTACAGCCCGGAGCGGATCAATCCCGGCGACAAGGAACAC ACCTTCACCAGCATCCTGAAGGTGGTCTCGGGACAGGACGCGCGGACCCTCGAGGTGGTTGCCTCGGTTTACTCCCAGGT GGTGATGCCGGGGGTGCATCGCGCCCCCTCCATCAAGGTGGCGGAGGCCGCCAAGGTGATCGAGAACACGCAGCGCGACC TGAACATAGCGCTTATGAACGAACTGGCGCTCATCTTCGATCGTCTCGGCATCGACACCGGCGAGGTGCTGGCCGCGGCA GCAAGCAAGTGGAACTTCCTGAACTTCAAGCCGGGACTCGTGGGGGGGCACTGCATCGGGGTCGACCCCTACTACCTCAC CTACCAGGCCGAGAAGATCGGCTACATCCCCCAGGTGATCCTCGCCGGGCGGCGCATCAACGACGGCATGGGGAAATTCG TGGCGCAGAGGGCGGTAAAGGAGATCATCAGGGCGGGGCACCATGTGCTCGGCTCCTACGTCACGGTGCTTGGGCTCACC TTCAAGGAGAACTGCCCGGACCTCAGGAACTCCAAGGTGGTGGACATCCTGGACGAGCTCGGGGACTACGGCCTCAGGAT CCAGGTCTGCGACCCGATGGCAGATCCGCAGGAGGCGAAGAGCGCCTACGGCGTGACACTCAGGCACCCGGACCGGCTGC AGCCGGCGGTTGCGGTCATCGTTGCCGTGGCGCACGAGAGCTACCGGCAGTGGTCGCCGGCGAAGTTCGCGAGCCTCATG GTGGAAAACCCGGTCCTGATCGACGTCAAGGGGATCTACGACAGCCGCCGGATGGCGGCCGCGGGGATCAGGGTCTGGTG CCTGTGA Protein sequence : MGHGRKISVVGLGYVGLPVAVAFGKVRRTIGFDISARRIEELRAGCDRTGEVSTEELVGADICYTDRIEVLREADFHVVA VPTPVDPANQPDLSLLTGASETVGKALKKGDIVVYESTVYPGVTEEICLPILERVSGLKSPEGFTVGYSPERINPGDKEH TFTSILKVVSGQDARTLEVVASVYSQVVMPGVHRAPSIKVAEAAKVIENTQRDLNIALMNELALIFDRLGIDTGEVLAAA ASKWNFLNFKPGLVGGHCIGVDPYYLTYQAEKIGYIPQVILAGRRINDGMGKFVAQRAVKEIIRAGHHVLGSYVTVLGLT FKENCPDLRNSKVVDILDELGDYGLRIQVCDPMADPQEAKSAYGVTLRHPDRLQPAVAVIVAVAHESYRQWSPAKFASLM VENPVLIDVKGIYDSRRMAAAGIRVWCL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1L | AAA64651.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 5e-118 | 59 |
| tviB | NP_458740.1 | Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 1e-103 | 54 |
| tviB | NP_807945.1 | VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 1e-103 | 54 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| GM18_1618 | YP_004198360.1 | nucleotide sugar dehydrogenase | VFG0431 | Protein | 5e-104 | 54 |
