Gene Information

Name : GM18_1618 (GM18_1618)
Accession : YP_004198360.1
Strain : Geobacter sp. M18
Genome accession: NC_014973
Putative virulence/resistance : Virulence
Product : nucleotide sugar dehydrogenase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0677
EC number : -
Position : 1964761 - 1966047 bp
Length : 1287 bp
Strand : +
Note : KEGG: gbm:Gbem_1754 nucleotide sugar dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase ; UDP-glucose/GDP-mannose dehydrogenase dimerisation

DNA sequence :
ATGGGGCACGGACGCAAGATATCGGTGGTTGGGCTTGGCTACGTGGGGCTGCCGGTGGCGGTCGCCTTTGGCAAGGTGCG
GCGCACCATCGGCTTTGACATCAGCGCGCGCAGGATCGAGGAGTTGCGCGCAGGCTGCGACCGGACCGGTGAGGTCTCCA
CGGAGGAGCTGGTCGGCGCGGACATCTGCTACACCGACAGGATCGAGGTGCTGCGTGAGGCGGACTTCCATGTGGTGGCG
GTCCCGACGCCGGTCGACCCGGCCAACCAGCCGGACCTCTCCCTCCTGACAGGCGCTTCGGAGACGGTAGGGAAGGCGCT
CAAGAAGGGGGACATCGTGGTTTACGAGTCCACGGTGTACCCCGGGGTCACCGAAGAGATCTGCCTTCCCATCCTGGAGC
GGGTCTCGGGGCTGAAAAGTCCGGAGGGGTTCACCGTGGGGTACAGCCCGGAGCGGATCAATCCCGGCGACAAGGAACAC
ACCTTCACCAGCATCCTGAAGGTGGTCTCGGGACAGGACGCGCGGACCCTCGAGGTGGTTGCCTCGGTTTACTCCCAGGT
GGTGATGCCGGGGGTGCATCGCGCCCCCTCCATCAAGGTGGCGGAGGCCGCCAAGGTGATCGAGAACACGCAGCGCGACC
TGAACATAGCGCTTATGAACGAACTGGCGCTCATCTTCGATCGTCTCGGCATCGACACCGGCGAGGTGCTGGCCGCGGCA
GCAAGCAAGTGGAACTTCCTGAACTTCAAGCCGGGACTCGTGGGGGGGCACTGCATCGGGGTCGACCCCTACTACCTCAC
CTACCAGGCCGAGAAGATCGGCTACATCCCCCAGGTGATCCTCGCCGGGCGGCGCATCAACGACGGCATGGGGAAATTCG
TGGCGCAGAGGGCGGTAAAGGAGATCATCAGGGCGGGGCACCATGTGCTCGGCTCCTACGTCACGGTGCTTGGGCTCACC
TTCAAGGAGAACTGCCCGGACCTCAGGAACTCCAAGGTGGTGGACATCCTGGACGAGCTCGGGGACTACGGCCTCAGGAT
CCAGGTCTGCGACCCGATGGCAGATCCGCAGGAGGCGAAGAGCGCCTACGGCGTGACACTCAGGCACCCGGACCGGCTGC
AGCCGGCGGTTGCGGTCATCGTTGCCGTGGCGCACGAGAGCTACCGGCAGTGGTCGCCGGCGAAGTTCGCGAGCCTCATG
GTGGAAAACCCGGTCCTGATCGACGTCAAGGGGATCTACGACAGCCGCCGGATGGCGGCCGCGGGGATCAGGGTCTGGTG
CCTGTGA

Protein sequence :
MGHGRKISVVGLGYVGLPVAVAFGKVRRTIGFDISARRIEELRAGCDRTGEVSTEELVGADICYTDRIEVLREADFHVVA
VPTPVDPANQPDLSLLTGASETVGKALKKGDIVVYESTVYPGVTEEICLPILERVSGLKSPEGFTVGYSPERINPGDKEH
TFTSILKVVSGQDARTLEVVASVYSQVVMPGVHRAPSIKVAEAAKVIENTQRDLNIALMNELALIFDRLGIDTGEVLAAA
ASKWNFLNFKPGLVGGHCIGVDPYYLTYQAEKIGYIPQVILAGRRINDGMGKFVAQRAVKEIIRAGHHVLGSYVTVLGLT
FKENCPDLRNSKVVDILDELGDYGLRIQVCDPMADPQEAKSAYGVTLRHPDRLQPAVAVIVAVAHESYRQWSPAKFASLM
VENPVLIDVKGIYDSRRMAAAGIRVWCL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 5e-118 59
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 1e-103 54
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 1e-103 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GM18_1618 YP_004198360.1 nucleotide sugar dehydrogenase VFG0431 Protein 5e-104 54