Gene Information

Name : GM18_1465 (GM18_1465)
Accession : YP_004198208.1
Strain : Geobacter sp. M18
Genome accession: NC_014973
Putative virulence/resistance : Virulence
Product : polysaccharide biosynthesis protein CapD
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1086
EC number : -
Position : 1776989 - 1778935 bp
Length : 1947 bp
Strand : +
Note : PFAM: polysaccharide biosynthesis protein CapD; KEGG: gem:GM21_2582 polysaccharide biosynthesis protein CapD

DNA sequence : 
ATGTTCCGCGCGAGAAGGATTCTGGTATTTTTCCTCGATTTAGCCCTGATTGCAGCTGCGTTTACTCTCGCTTTCCTGCT
TCGATTCGATTTCCGCATACCGTCCAGTCAGATGGCCAACCTGCTGCACGGGGTGCTGGTTGTTCTCGCCGCCAAGCCGG
TCATGTTCATCGCTTCGGGGATGTATCGCAGCATCTGGCGCTACGCCTCCCTGCAGGACGGCTATGAAATCTTCAAGGTC
GTCACCCTCTCCACAGTGGGCTCCACCCTCGCCCTCGTTTATCTGAAAGGGCCCTTCGCCCTGCCGCGTTCCATCTACTT
TCTCGACTGGTTCCTGCTCTTCTCGATGGTCGCCACTAGCCGGCTGCTCTGGAGAATCTATCGTGAAACGAAGGTCATGC
CCTCTCTGCCCAAGGGGCGGAAAACGCTGATCATCGGAGCGGGCGACGCCGGCAATCTGCTCCTCAAGGAGATCCGCAAG
CAGGCGGAGTCGACCTATAACGTCATAGGCTTCGTGGACGACGACCGGGAGAAGTGGGGCATGCGGCTGGCCGGTGTCCG
GGTTCTTGGGGGCACCGAGCGGCTCAGCGCCTTGGTGCGCAAGCACAACGTGGAAGAGGTCATCTTCGCTATCCCCTCCG
GGGACAGAGAGCTGATGCGTCGCGTCATCGCTAACTGCGAGAGGGCCAAGGCGCGCTTCAAGACCCTTCCCGGCATTACC
GCCATCATAGATGGCAAGGTCTCCATGAGCCAGATCAAGGACGTCGAGATCGAGGACCTCCTGGGGCGCGATCAGGTGAT
GCTGGACCAGACGGCGATACGCAACTACCTTACCGACAAGAGGGTGCTGGTAACCGGCGCCGCCGGAAGTATTGGGAGCG
AGATCTGCCGCCAGGTGGCGCATTTCAAGCCGGCGAAGCTGGTGCTCTTCGACCACGCCGAGACCCCGCTGTTCTACATC
GAGAAGGAACTCGCCGCTGAGTTTCCGGATCTGCGTATCATCCCGATGGTTGGGGACGTGAAGAACAAAGACCGCGTCGA
GACCGTGTTCGATGAGTTCTGCCCGGACGTTGTTTTTCACGCCGCGGCCTACAAGCATGTTGCGATGATGGAATACAACC
CCGCAGAGGCCGTGCTGAACAACGTGATGGGTTCCAAAGTCGTTGCGGATGCCGCCCACAAGACCAAGGTGCGCAACTTC
GTCATGGTCTCCACCGACAAGGCGGTGAACCCCACCAACGTAATGGGGGCGACCAAGCGTAGCGCCGAGATCTACGTGCA
GGCGCTGGCGGCGAAGAGCCATACCAAGTTCACCACCGTCCGCTTCGGCAACGTCCTGGGGAGCAACGGCAGCGTCATTC
CTCTGTTCAAGGAGCAGATCCGCAAGGGGGGACCGGTAACGGTAACCGACAAGGACGTGGTGCGCTACTTCATGACCATT
CCCGAGGCGTCGCAGTTGGTGATGCAGGCCGGGTGCATAGGGCACGGAGGCGAGATCTTCGTGCTGGACATGGGCGAGCC
GGTCAGGATACTTTCACTGGCCGAAGAGCTCATCAGGCTGTCCGGCCTCATCCCGTACAAGGAGATAGACATCGAGTTCA
CCGGGTTGAAGCCCGGCGAGAAGCTCTTCGAGGAACTGCTGATCGACGGCGAGGGGATCAAGCCGACCAGCCATAACAAG
ATCCGCGTGGTGGCCTCGGTGGAGACCGACCTGAAGAAGGTCTCCAGCGATTTCGACGAGCTCTTCAGCCATGCCAGGAC
TCATGACCTCGGGGCACTGCTTGTTGCGCTGCGGGGCATCGTGCCGGAGTTCGTGCCGCGATACCAGTTCGACGTTGCGC
CTCCTATTGCCTTTCAAAGAGTCAGGCCCGATCTGTTCCCGCCTCAAAAGCTCACCTTTATACGAAATCTGCGTCTTGCC
GGTACCAACGAGGGGACGGCCGCTTAA

Protein sequence : 
MFRARRILVFFLDLALIAAAFTLAFLLRFDFRIPSSQMANLLHGVLVVLAAKPVMFIASGMYRSIWRYASLQDGYEIFKV
VTLSTVGSTLALVYLKGPFALPRSIYFLDWFLLFSMVATSRLLWRIYRETKVMPSLPKGRKTLIIGAGDAGNLLLKEIRK
QAESTYNVIGFVDDDREKWGMRLAGVRVLGGTERLSALVRKHNVEEVIFAIPSGDRELMRRVIANCERAKARFKTLPGIT
AIIDGKVSMSQIKDVEIEDLLGRDQVMLDQTAIRNYLTDKRVLVTGAAGSIGSEICRQVAHFKPAKLVLFDHAETPLFYI
EKELAAEFPDLRIIPMVGDVKNKDRVETVFDEFCPDVVFHAAAYKHVAMMEYNPAEAVLNNVMGSKVVADAAHKTKVRNF
VMVSTDKAVNPTNVMGATKRSAEIYVQALAAKSHTKFTTVRFGNVLGSNGSVIPLFKEQIRKGGPVTVTDKDVVRYFMTI
PEASQLVMQAGCIGHGGEIFVLDMGEPVRILSLAEELIRLSGLIPYKEIDIEFTGLKPGEKLFEELLIDGEGIKPTSHNK
IRVVASVETDLKKVSSDFDELFSHARTHDLGALLVALRGIVPEFVPRYQFDVAPPIAFQRVRPDLFPPQKLTFIRNLRLA
GTNEGTAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0063 YP_300153.1 capsular polysaccharide biosynthesis protein Not tested SCC15305cap Protein 2e-101 48
cap1D AAA64643.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 1e-100 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GM18_1465 YP_004198208.1 polysaccharide biosynthesis protein CapD VFG1300 Protein 4e-100 47