Gene Information

Name : GM18_1462 (GM18_1462)
Accession : YP_004198206.1
Strain : Geobacter sp. M18
Genome accession: NC_014973
Putative virulence/resistance : Virulence
Product : polysaccharide biosynthesis protein CapD
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1086
EC number : -
Position : 1774527 - 1776497 bp
Length : 1971 bp
Strand : +
Note : PFAM: polysaccharide biosynthesis protein CapD; KEGG: gem:GM21_2582 polysaccharide biosynthesis protein CapD

DNA sequence : 
ATGTTCCGCACTAGAAGGGTCTTGGTGTTTTTCCTCGATGTGGCCTTGGTTTGCGCCGCTTTTTTTGCTGCTTTTCTGCT
GCGCTTCGATTTTCAGATTCCGGCTGATCAGATAGATAACCTCCTGTCAGGATTAATGGTCATTCTTCTGGCCAAGCCGG
TTCTGTTCGTAGCTTCCGGGATGTACCTCAGCATCTGGCGCTATGCCTCGCTACAGGACGCCTACGAAATTTTCAAGGTC
GTGACCCTCTCCTCGCTGATCTCAGCTTTAGTGTTGATTTTCATGAACGGTCCCTTCGGTTTGCCGCGCTCCATCTATTT
TCTGGACTGGTTTCTGCTCTTTTCCCTTGTCGCCTCCAGCCGGCTGGTTTGGAGAATATATCGCGAAACCAAGGTGATGC
CGTCGCTGCGTAAGGGTAAGAAGACACTTATCATAGGTGCCGGTGAAGCCGGAAACCTTTTGCTCAAGGAAATCCGCAAG
CAGGCCGGTTCCACCTACAACGTTGTTGGTTTCGTAGATGATGACCCCGAAAAAACCGGGATGCGCCTTGCAGGCGTGCG
GGTTCTGGGCAGGACCGACCGGCTCTGCGCATTGGTGCGCAAATACAACATCGAAGAGGTGATCTTTGCCATCCCCTCCG
GGGGGCAGGATCTGATGCGCCAGGTGATCGCCAACTGCGAGCGCGCCAAGGCGCGCTTCAAGACGCTTCCGGGCATCACC
GCCATCATCGACGGCAAGGTCTCGATGAGCCAGATCAAGGATGTGGAGATCGAGGATCTGCTAGGGCGCGACCCGGTGGT
GCTAGACCAGACGGCAATCCGTAACTATTTGACCGACAAGCGGGTGCTGGTGACCGGCGCCGCGGGAAGCATCGGGAGCG
AGATCTGCCGCCAGGTGGCGCGCTTCAACCCTGCCAAGCTGGTGCTGTTCGACCATGCCGAGACCCCCCTCTTCTACATC
GAGAAAGAACTTGCCGCGGCGTTTCCGGAGCTTCGCATCATCCCGACCGTGGGGGACGTGAAGAACCAGGATCGCGTGGA
GGCTGTCTTCGACGAGTTCTGCCCGGACGTTGTTTTCCACGCCGCCGCGTACAAGCACGTCGCGATGATGGAGTACAACC
CGGCGGAGGCGGTGCTGAACAACGTGATGGGTTCCAAGGTCGTTGCGGATGCTGCCCACAAGACCAAGGTGCGCAATTTC
GTCATGGTTTCCACCGACAAGGCGGTCAACCCCACCAACGTCATGGGGGCCACCAAGAGAAGCGCCGAGATCTACGTGCA
GGCGCTGGCGGCGAAGAGCCAGACCAAATTTACCACCGTCCGGTTCGGAAATGTACTGGGGAGCAACGGCAGCGTTATTC
CTCTGTTCAAGGAGCAGATACGAAGGGGCGGTCCGGTGACGGTGACCGACAAGGATGTGGTGCGCTATTTCATGACCATA
TCCGAGGCCTCGCAACTGGTGATGCAGGCCGGGTGCATCGGGCACGGAGGCGAGATCTTCGTGCTGGATATGGGTGAACC
GGTCAGGATCCTGTCCTTAGCCGAGGAACTGATCAGGCTTTCCGGGTTCATCCCCTACAAGGAAATCGACATCGAGTTCG
TCGGGCTGAAGCCGGGCGAGAAGCTCTTCGAGGAGCTCCTGATCGACGGTGAAGGGATCAAACCGACCAGCCACAAGAAA
ATCCGCGTTATGGCTCCTGTCGAGACTGACCTGAAAAAAGTGACTAACGACTTTGAAGATCTTTTCAGAAATGCCAGGAA
CCAGGACCTTGAGGCCCTGTTGGCCACTTTGAAACACATCATTCCGGAGTTCGCCCCGCGTTACCAGTTTGATGTAACTC
CTCCTTTTGCCTTTCAAAGGGTCAGGCCCGACCTGTTCCCGCCTCAGAAACTCACCTTTGTCAGGAATCTGCGTATCGCC
GGGACTAATAAGGGGACGGCGGCTTATAGACTGCATTTAACAGGGATGTAG

Protein sequence : 
MFRTRRVLVFFLDVALVCAAFFAAFLLRFDFQIPADQIDNLLSGLMVILLAKPVLFVASGMYLSIWRYASLQDAYEIFKV
VTLSSLISALVLIFMNGPFGLPRSIYFLDWFLLFSLVASSRLVWRIYRETKVMPSLRKGKKTLIIGAGEAGNLLLKEIRK
QAGSTYNVVGFVDDDPEKTGMRLAGVRVLGRTDRLCALVRKYNIEEVIFAIPSGGQDLMRQVIANCERAKARFKTLPGIT
AIIDGKVSMSQIKDVEIEDLLGRDPVVLDQTAIRNYLTDKRVLVTGAAGSIGSEICRQVARFNPAKLVLFDHAETPLFYI
EKELAAAFPELRIIPTVGDVKNQDRVEAVFDEFCPDVVFHAAAYKHVAMMEYNPAEAVLNNVMGSKVVADAAHKTKVRNF
VMVSTDKAVNPTNVMGATKRSAEIYVQALAAKSQTKFTTVRFGNVLGSNGSVIPLFKEQIRRGGPVTVTDKDVVRYFMTI
SEASQLVMQAGCIGHGGEIFVLDMGEPVRILSLAEELIRLSGFIPYKEIDIEFVGLKPGEKLFEELLIDGEGIKPTSHKK
IRVMAPVETDLKKVTNDFEDLFRNARNQDLEALLATLKHIIPEFAPRYQFDVTPPFAFQRVRPDLFPPQKLTFVRNLRIA
GTNKGTAAYRLHLTGM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0063 YP_300153.1 capsular polysaccharide biosynthesis protein Not tested SCC15305cap Protein 4e-103 49
cap1D AAA64643.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 1e-100 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GM18_1462 YP_004198206.1 polysaccharide biosynthesis protein CapD VFG1300 Protein 3e-100 45
GM18_1462 YP_004198206.1 polysaccharide biosynthesis protein CapD VFG0029 Protein 5e-80 41