Gene Information

Name : GM18_1431 (GM18_1431)
Accession : YP_004198175.1
Strain : Geobacter sp. M18
Genome accession: NC_014973
Putative virulence/resistance : Virulence
Product : nucleotide sugar dehydrogenase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0677
EC number : -
Position : 1740155 - 1741444 bp
Length : 1290 bp
Strand : +
Note : KEGG: sat:SYN_01113 UDP-N-acetyl-D-galactosamine 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase ; UDP-glucose/GDP-mannose dehydrogenase dimerisation

DNA sequence : 
ATGTTTAAGCACGACCGCATTGTTTCCGTCATCGGTTTGGGATATGTCGGTCTCCCGGTAGCGGTGGCGTTTGGCAAGGT
CCGCAAGACCTATGGTTTCGACATCAACACGCTGCGTATCGAGGAGCTGAAAAAGGGATTCGACCGCACCGGCGAGGTTC
TTCCGAGCGACCTTGCCGAGACGGACATCGTCTTCACCGACAGCATCGAGGTACTCAGGGAGGCTGACTTCCATATCGTG
GCGGTTCCCACGCCGGTTGATTCCGCGAACCAGCCGGACCTCACCCCGATGCTGCGCGCCTCCGAGACCGTGGGGCGGGC
GCTCAAACCGGGGGACATCGTGGTGTACGAATCGACGGTGTACCCGGGCGTCACCGAGGAGGAGTGCGTGCCGATCCTCG
AGCGCGTCTCCCGCCTTACCTGCGGCAAGGAGTTCTTCGTGGGGTACAGCCCCGAACGCATCAACCCCGGCGACAAGGAG
CACACCTTCACCAAGATCAAGAAGGTGGTCTCGGGGCAGGACCAGGCCACCCTCCAGATCGTGGGAGACGTCTACGAGTC
GGTGGTGACCGCGGGCGTGCACCGCGCCCCTTCCATAATGGTCGCCGAGGCCGCCAAGGTGATCGAGAACACCCAGCGCG
ACCTGAACATCGCGCTTATGAACGAACTGGCGCTCATCTTCGACCGCATGGGGATCGACACCAATTCGGTGCTCGAGGCG
GCCGGCACCAAGTGGAACTTCCTGAAGTTCCAGCCCGGACTGGTCGGCGGCCACTGTATCGGCGTCGATCCCTACTACCT
CACCCATAAGGCCGAGAAAATGGGGTACATCCCGCAGGTGATCCTTGCGGGCCGGCGCATCAACGACGGCATGGGGAAGT
TCATCGCCCAGCGCACCGTGAAGGAGATGATCCGGGCCGGTCACAACGTCCTCGGGGCGCGGGTGACGGTGCTTGGCCTC
ACCTTCAAGGAGGACTGCCCCGATCTGCGCAACTCGAAGGTGATCGACATCATACGCGAACTGCAGGACTACGGCATCGA
TGTCCAGGTCTGCGACCCGCTGGCCGACGCCGACGAGGCCCGGCACGAGTACGGCGTCACCCTCACCCCCGCTGATAAGC
TGGCTAGGTGCGAGGCGGTGGTGGTCGCCGTGGCCCACAAGGAGTATCGCAGCCTGTCGCCCGACCAGCTCTGCGGCATG
ATGAACGGGTCCCCCCTCGTCATCGACGTGAAGGGGGTCTTCAACCAGCAGCAGCTTGCCGAGAAAAAGATCCGGCTCTG
GAGGCTCTAA

Protein sequence : 
MFKHDRIVSVIGLGYVGLPVAVAFGKVRKTYGFDINTLRIEELKKGFDRTGEVLPSDLAETDIVFTDSIEVLREADFHIV
AVPTPVDSANQPDLTPMLRASETVGRALKPGDIVVYESTVYPGVTEEECVPILERVSRLTCGKEFFVGYSPERINPGDKE
HTFTKIKKVVSGQDQATLQIVGDVYESVVTAGVHRAPSIMVAEAAKVIENTQRDLNIALMNELALIFDRMGIDTNSVLEA
AGTKWNFLKFQPGLVGGHCIGVDPYYLTHKAEKMGYIPQVILAGRRINDGMGKFIAQRTVKEMIRAGHNVLGARVTVLGL
TFKEDCPDLRNSKVIDIIRELQDYGIDVQVCDPLADADEARHEYGVTLTPADKLARCEAVVVAVAHKEYRSLSPDQLCGM
MNGSPLVIDVKGVFNQQQLAEKKIRLWRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 9e-130 62
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 4e-113 54
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 4e-113 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GM18_1431 YP_004198175.1 nucleotide sugar dehydrogenase VFG0431 Protein 2e-113 54