|
Name : Despr_R0013 (Despr_R0013) Accession : YP_004194114.1 Strain : Desulfobulbus propionicus DSM 2032 Genome accession: NC_014972 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 697849 - 698304 bp Length : 456 bp Strand : + Note : COGs: COG0691 tmRNA-binding protein; InterPro IPR000037: IPR020081; KEGG: dak:DaAHT2_2276 SsrA-binding protein; PFAM: SmpB protein; SPTR: SsrA-binding protein; TIGRFAM: SsrA-binding protein; tmRNA as predicted by Rfam (RF00023), score 238.67; PFAM: SmpB p DNA sequence : ATGGCACAGAAGATCGTCAGTAAAAATAAAAAGGCCTTTCACGATTACCACATCGAGCAGACCTTCGAGGCCGGAATGGT GCTCAGCGGGCCGGAGGTCAAATCGTTGCGCGCCGGCAAGGTCAACCTCCGCGACGGCTACGCCCAGCTCAAGGACGGCG AGGTCTTTTTGTACAACGTGCATATCTCGCCCTACTCCTACGCCACCCACATCAACCAGGACCCGCTGCGGGTGCGCAAG CTGCTGTTGCACCGCCGCGAGATCCGCAAGCTGATCGGTAAGCTGCACGAGAAAGGCATTGCGCTGATCCCACTCAAGAT ATATTTTATCGCCAATGGCAAAGCCAAGGTGGAACTGGGCCTCGCCAAAGGAAAAAAACTCTACGACAAACGGGCAGCCC TCAAGGAAAAGCAATCCGACCGCGACATGGAACGCTCCATGCGGCGCGACGACTGA Protein sequence : MAQKIVSKNKKAFHDYHIEQTFEAGMVLSGPEVKSLRAGKVNLRDGYAQLKDGEVFLYNVHISPYSYATHINQDPLRVRK LLLHRREIRKLIGKLHEKGIALIPLKIYFIANGKAKVELGLAKGKKLYDKRAALKEKQSDRDMERSMRRDD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 3e-31 | 57 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 8e-30 | 50 |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 2e-26 | 48 |
