Gene Information

Name : Despr_2078 (Despr_2078)
Accession : YP_004195517.1
Strain : Desulfobulbus propionicus DSM 2032
Genome accession: NC_014972
Putative virulence/resistance : Virulence
Product : Fis family two component sigma54 specific transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 2373659 - 2375056 bp
Length : 1398 bp
Strand : -
Note : COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR020441: IPR002078: IPR001789: IPR002197: IPR 003593; KEGG: dol:Dole_1777 two component, sigma54 specific, Fis family transcriptional regulat

DNA sequence :
ATGCCCAGTAAGCAGCGTCTCCTGATCATTGACGATGAAGAAAACATGCGGCACATGCTGACCTCGGTCCTCAGCCGCCT
TGGCTATCAGGTCGAGGTGGCGGCCCATGGCCAGGCAGGCCTTGACGCCCTGGCCACGGGGGATTTTGATGTGGTGCTCT
GTGATATTCGCATGCCGGGAATGGATGGCCTGGAGTTTCTCCGTCAGGCGATCGCAGCCGGAATCAGCGCCACGATCATC
ATGATGTCCGCCTTTGGCTCTGTTGACACCGCCTTGGCGGCCATGCGTCTCGGGGCCTATGATTATATCTCCAAGCCGTT
CAAGGCCGAGGAAATTGAGCTGACCCTGCGCAAGGCCGAGGAACGGGAAGGACTGCGACGGGCGAATCGCGAGCTGCGCA
ATACCGTGGCCGCATTGAAGGAAGAATATACGTTTGGCAGAATGGTGGCGCACAGCAAGGCCATGCAGGAGGTGTTCGCC
CTGGCCGCCAAGGTGGCTCCCCATTCGACCACCGTGCTGATCACCGGCGAAAGCGGTACCGGCAAGGAGTTGGTGGCCCA
GGGGATTCACCAGCAGAGCGGCCGGGTGTCGGGCAGGTTCGTGGCCGTCAACTGCGGCGGATTGCCCGACAATCTGATTG
AAAGCGAACTGTTCGGTTATAAAAAAGGGGCATTTACCGGCGCGGACAAGGACAAGGTCGGCCTGTTTTTGGAGGCGGAC
GGCGGGACCCTGTTTCTCGATGAAATCGGCGAATTGCCGTTGTCGTTGCAGGTGAAGCTGCTGCGGGTGTTGCAGGAGGG
GGAAGTGCAGCCGTTGGGTGCGGCCTGCCCCCGAAAGGTCGACGTACGGGTGATTGCCGCCACCGCCCGGGACTTGGCGC
AGGAGGTGCGGATGGGGTTGTTCCGCCAGGATCTGTTCTACCGGCTCAATGTGGTGCACATCGCCTTGCCGCCCTTGCGT
GAGCGGACCGGCGACATTCCCCTGCTCAGCGAATTTTTCCTTCAACGCTACGTCCGCAGGCTCGAATCGCCGGTGACCGG
CATCGCGCCCTCGACCATGGCGTTGTTGCTCCAGCATGGCTGGCCGGGCAATGTGCGTGAACTGGAAAACGTGATCGAAC
GGGCGGTGATTTTGGCCGAAAAAAAGGTGCTGTTGCCGGAGAACCTGCCCCCGCAATTCGGTGTTCGCCCCAGCGGGCGG
CGGCTCGATGATTTTTTTGGTGGATTTTCCATCAAGCAGGCCCAGCGGATCATGGAAACCGCGCTTATTGGCCGTGCCCT
GGAGGTGACCGGCGGCAACAAATCCAAGGCATCGGAATTGTTGGAGATCAGTTATCCATCCCTGCTCGCCAAAATCAAGG
AGTACGCCCTTGCTCCCGTTGGCAAGGATTCGTCATGA

Protein sequence :
MPSKQRLLIIDDEENMRHMLTSVLSRLGYQVEVAAHGQAGLDALATGDFDVVLCDIRMPGMDGLEFLRQAIAAGISATII
MMSAFGSVDTALAAMRLGAYDYISKPFKAEEIELTLRKAEEREGLRRANRELRNTVAALKEEYTFGRMVAHSKAMQEVFA
LAAKVAPHSTTVLITGESGTGKELVAQGIHQQSGRVSGRFVAVNCGGLPDNLIESELFGYKKGAFTGADKDKVGLFLEAD
GGTLFLDEIGELPLSLQVKLLRVLQEGEVQPLGAACPRKVDVRVIAATARDLAQEVRMGLFRQDLFYRLNVVHIALPPLR
ERTGDIPLLSEFFLQRYVRRLESPVTGIAPSTMALLLQHGWPGNVRELENVIERAVILAEKKVLLPENLPPQFGVRPSGR
RLDDFFGGFSIKQAQRIMETALIGRALEVTGGNKSKASELLEISYPSLLAKIKEYALAPVGKDSS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 4e-69 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 4e-69 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Despr_2078 YP_004195517.1 Fis family two component sigma54 specific transcriptional regulator BAC0089 Protein 3e-91 48
Despr_2078 YP_004195517.1 Fis family two component sigma54 specific transcriptional regulator BAC0467 Protein 2e-84 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Despr_2078 YP_004195517.1 Fis family two component sigma54 specific transcriptional regulator VFG1249 Protein 9e-68 44
Despr_2078 YP_004195517.1 Fis family two component sigma54 specific transcriptional regulator VFG1214 Protein 5e-66 43
Despr_2078 YP_004195517.1 Fis family two component sigma54 specific transcriptional regulator VFG1248 Protein 5e-50 41