Gene Information

Name : Despr_0135 (Despr_0135)
Accession : YP_004193617.1
Strain : Desulfobulbus propionicus DSM 2032
Genome accession: NC_014972
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 144197 - 144676 bp
Length : 480 bp
Strand : +
Note : COGs: COG2003 DNA repair protein; InterPro IPR020891: IPR001405; KEGG: dda:Dd703_2347 DNA repair protein RadC; PFAM: DNA repair protein RadC; SPTR: DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: Protein of unknown function (DUF2466); TIG

DNA sequence : 
ATGCTCTACAGCAGAGACACCAGCGGGTGCTACCAGCCCGCATCCAGGGACACCATCCTTGCCGCGGCCCGCAGGCTGAG
CAGTTGTCAGCTCCGGCGCGGGGCGGCCATCACCTCACCCCTTGCCGCCAGGGAGGCCATCGGCCTCAAACTGGCCGGAC
TGGAACACGAATCGTTCGCCTGTCTGTTCCTCGACGGCCGCCACCAGGTGCTCGCCTGGCGGGAGCTGTTCCACGGCTCG
GTCAACCGGACCACGGTCCACCCGCGCGAGATCGTCAAGGAGGCGCTGCGGCTGAACGCCGCGGCGGTCATCCTGGCGCA
CAACCACCCCTCGGGCAGCACCCTGCCGAGCAGTGAGGACATCGAACTGACCAAGGCGCTCACCGAGATCCTGGCGATCA
TCGATGTGCGCGTGCTCGATCACCTGATCGTGGGCGAAGAGATCGTCGCCCTGACCGAAACCGGCCACCATCAACCATGA

Protein sequence : 
MLYSRDTSGCYQPASRDTILAAARRLSSCQLRRGAAITSPLAAREAIGLKLAGLEHESFACLFLDGRHQVLAWRELFHGS
VNRTTVHPREIVKEALRLNAAAVILAHNHPSGSTLPSSEDIELTKALTEILAIIDVRVLDHLIVGEEIVALTETGHHQP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 5e-21 52
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 2e-21 49
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 3e-22 49
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 3e-21 49
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 3e-21 49
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 3e-24 49
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 3e-24 49
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-24 49
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 2e-22 48
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 3e-21 48
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 2e-22 48
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 2e-21 48
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 6e-22 48
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 3e-22 48
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 2e-22 48
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 2e-22 48
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 2e-22 48
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 2e-21 48
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 9e-22 48
unnamed AAL08475.1 unknown Not tested SRL Protein 4e-22 47
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 8e-21 47
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 8e-21 47
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 5e-21 47
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 1e-22 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Despr_0135 YP_004193617.1 DNA repair protein RadC VFG1678 Protein 2e-21 52
Despr_0135 YP_004193617.1 DNA repair protein RadC VFG0660 Protein 8e-22 49
Despr_0135 YP_004193617.1 DNA repair protein RadC VFG1119 Protein 8e-25 49
Despr_0135 YP_004193617.1 DNA repair protein RadC VFG1528 Protein 9e-23 48
Despr_0135 YP_004193617.1 DNA repair protein RadC VFG1617 Protein 1e-22 48
Despr_0135 YP_004193617.1 DNA repair protein RadC VFG1066 Protein 2e-22 47