Gene Information

Name : VVMO6_04106 (VVMO6_04106)
Accession : YP_004191331.1
Strain :
Genome accession: NC_014966
Putative virulence/resistance : Virulence
Product : TRAP-type transporter periplasmic protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1638
EC number : -
Position : 1294718 - 1295683 bp
Length : 966 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAACCATGAACCGAATTACACTTGCTATGCTGACTGTGGGATTGAGCCTTTCTTCGAATGCTGCAACGACGTTGAA
AATGGGAATGCAAGCGTCGGTTGGCTCAGTGGAATACACCTCTGCCAAGCTGCTTGCCGACACGGTTGAAGAGATGAGTA
AGGGTGAGTTGAAGCTAGCGTTATATCCAAGTGCGCAACTGGGCGACGACCGTGCCATGTTACAGCAGCTCTCTATGGGT
GACTTAGACATCACTTACGCGGAATTTGGCCGTATGGGACTTTGGATCCCAAGAGCAGAAGCGGTGACCTTACCTTACGT
TGCTCGTGATTATGACCATTTACGCCGCATGTTTGATTCCGAGTTTGGCCAAGGCATTCGTCAGGAAATGCTAACCAAGT
TTAATTGGCGTGCGCTAGATACTTGGTACAACGGAACACGTGAAACCACCTCTAACCGTCCATTGAAGTCAATTTCAGAT
TTTAAAGGTCTGAAATTGCGCGTGCCGAATGCGAAACCAAATCTGAATTACGCCAAGTTGTCTGGGGCATCACCAACACC
GATGGCATTTTCTGAAGTTTACCTCGCGCTACAAACCAATGCAGTTGACGGGCAAGAGAACCCATTGCCAACCATTAAGA
CAATGAAGTTCTACGAGGTGCAAAGCAACTTGGCGATCACCAATCACATCGTGAACGACCAGATGGTGCTGATTTCAGAA
AGCACGTGGCAAAAGCTCTCTGAGCAGGAACGTGAAATTGTCGCTAACGCGGTGAAACAAACAGGGGAAGCGCATACCGC
ATCGGTGAAAAAGCAAGAAGCGGAGCTGATCTCTTTCTTTGAGGCGCAGGGTGTGAATGTCACCTACCCAGAACTTGCCC
CGTTCCGTGAAGCCATGCAGCCGCTTTACTCAGAGTTTGAAAAGAAAATTGGTCAGCCGATCGTGTCTAAGTTGGCGGCA
ATGTAG

Protein sequence : 
MKTMNRITLAMLTVGLSLSSNAATTLKMGMQASVGSVEYTSAKLLADTVEEMSKGELKLALYPSAQLGDDRAMLQQLSMG
DLDITYAEFGRMGLWIPRAEAVTLPYVARDYDHLRRMFDSEFGQGIRQEMLTKFNWRALDTWYNGTRETTSNRPLKSISD
FKGLKLRVPNAKPNLNYAKLSGASPTPMAFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQSNLAITNHIVNDQMVLISE
STWQKLSEQEREIVANAVKQTGEAHTASVKKQEAELISFFEAQGVNVTYPELAPFREAMQPLYSEFEKKIGQPIVSKLAA
M

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1779 NP_231414.1 C4-dicarboxylate-binding protein Not tested VPI-2 Protein 2e-132 82
dctP-1 YP_001217320.1 C4-dicarboxylate-binding periplasmic protein Not tested VPI-2 Protein 2e-132 82
VPI2_0027c ACA01844.1 C4-dicarboxylate-binding periplasmic protein Not tested VPI-2 Protein 2e-132 82

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VVMO6_04106 YP_004191331.1 TRAP-type transporter periplasmic protein VFG1112 Protein 8e-133 82