Gene Information

Name : VVMO6_00828 (VVMO6_00828)
Accession : YP_004188053.1
Strain :
Genome accession: NC_014965
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 921054 - 921923 bp
Length : 870 bp
Strand : +
Note : -

DNA sequence : 
ATGAACAATAAGCAACTTCTGACCACGTTTTGGCTATCACTCAGCTTACTGATGGCATCCCTATTTTCCTTTTCGGCTTG
GGCACAAGCGGAAGAGACCGCGTTGCCAGCCAATCTTGCACCGGGCGGTAGCGTGACGGTTTCACAAATGCAGAGTGACA
CCAGTAAGAGTGAATTTATGAGTGTGGGTAGTGGAGGCGGTATCCCTGCTTTCACCATGACCACCAACCCTGACGGCAGT
GAAGACTACTCGGTCACGTTGCAGATTTTAGCGTTAATGACCATGCTTGGCTTCTTGCCAGCGATGGTGATTTTGATGAC
CTCATTCACTCGGATTGTGGTGGTGATGTCGATTTTGCGGCAGGCCATGGGTCTGCAACAAACGCCGTCAAACCAGGTCA
TTATTGGTATCGCACTTTTCTTAACCTTTTTTATCATGTCGCCCGTGATTAACGAAGTGAATGAACAGGCGGTTCAACCG
TACCTTAATGAGCAGCTCACCGCACGCGAAGCGTTTGATGCCGCACAAGGGCCAATGAAAGCGTTCATGCTCAAGCAAAC
ACGCGTGAAAGATCTCGAGACATTCGTCAATATGTCAGGAGAGCAGGCCACCAATCCCGAAGATGTTTCTATGGCGGTGT
TGATCCCCGCATTTATCACCTCTGAGCTGAAAACCGCATTCCAAATCGGATTCATGCTGTTTTTGCCGTTCCTTATCATT
GACCTTGTGGTGGCTTCGGTATTGATGGCGATGGGTATGATGATGTTGTCACCGATGATCGTCTCGCTGCCGTTTAAGCT
GATGTTGTTCGTGTTAGTCGATGGCTGGAACCTGATCCTTTCCACTCTCGCAGGCAGTTTTGCCTTATAG

Protein sequence : 
MNNKQLLTTFWLSLSLLMASLFSFSAWAQAEETALPANLAPGGSVTVSQMQSDTSKSEFMSVGSGGGIPAFTMTTNPDGS
EDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFIMSPVINEVNEQAVQP
YLNEQLTAREAFDAAQGPMKAFMLKQTRVKDLETFVNMSGEQATNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLII
DLVVASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSFAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 7e-27 43
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 5e-27 43
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 7e-27 43
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-26 43
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 4e-27 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 4e-27 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 4e-26 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 4e-26 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 2e-26 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 3e-26 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 3e-26 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 3e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VVMO6_00828 YP_004188053.1 flagellar biosynthesis protein FliP VFG1259 Protein 2e-62 67
VVMO6_00828 YP_004188053.1 flagellar biosynthesis protein FliP VFG2016 Protein 5e-59 62
VVMO6_00828 YP_004188053.1 flagellar biosynthesis protein FliP VFG2494 Protein 1e-53 57
VVMO6_00828 YP_004188053.1 flagellar biosynthesis protein FliP VFG2338 Protein 1e-46 54
VVMO6_00828 YP_004188053.1 flagellar biosynthesis protein FliP VFG0519 Protein 1e-26 41