Gene Information

Name : Thebr_0113 (Thebr_0113)
Accession : YP_004185128.1
Strain : Thermoanaerobacter brockii Ako-1
Genome accession: NC_014964
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : S : Function unknown
COG ID : COG1576
EC number : -
Position : 102149 - 102616 bp
Length : 468 bp
Strand : +
Note : PFAM: protein of unknown function DUF163; KEGG: tpd:Teth39_0106 rRNA large subunit methyltransferase

DNA sequence :
ATGAAGATATATATAATAGCTGTTGGAAAAATAAAGGAGAACTATATAAGCGATGGAATAGTTTTTTATTTAAAAAAATT
GCGCCCTTATTGTGAAATAGAAATTAAAGAAGTAGAAGAAGAAAAAGCTCCTCAAAATTTAAGTGAAAAAGAAAAAGAGG
AGATTTTGCGTAAAGAAGGAGAGAGAATTCTTTCTAAAATAAAAAAAGGAAGCTTTGTTGTTTCTCTTGCTATAGAAGGA
AAAGAAATAGACTCATATAAATTTTCCCAATTTATAAAGGCTACTTTTCAATCTGGTTATAGAGAAATGACCTTTGTAAT
AGGTGGCTCGTTGGGATTGTGGGAAAATATAAAGAAACAATCTCACTTAAATCTTTCTTTTTCTAAAATGACATTTCCTC
ATCAATTGATGCGGCTCATACTTTTAGAACAGCTTTATTTAGCATTTGATGGTAAAAATCACTTGTGA

Protein sequence :
MKIYIIAVGKIKENYISDGIVFYLKKLRPYCEIEIKEVEEEKAPQNLSEKEKEEILRKEGERILSKIKKGSFVVSLAIEG
KEIDSYKFSQFIKATFQSGYREMTFVIGGSLGLWENIKKQSHLNLSFSKMTFPHQLMRLILLEQLYLAFDGKNHL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 6e-26 52
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 8e-26 52
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 6e-26 52
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 8e-26 52
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 6e-26 52
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 6e-26 52
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 6e-26 52
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 6e-26 52
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 6e-26 52
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 6e-26 52
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 6e-26 52
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 6e-26 52
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 8e-26 51
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 2e-25 51
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 5e-25 50
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 5e-25 50
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 9e-25 49
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 3e-21 47