Gene Information

Name : Isop_1062 (Isop_1062)
Accession : YP_004178199.1
Strain : Isosphaera pallida ATCC 43644
Genome accession: NC_014962
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 1526312 - 1527166 bp
Length : 855 bp
Strand : -
Note : COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component; InterPro IPR003593: IPR003439: IPR017871; KEGG: psl:Psta_4675 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein; PFAM:

DNA sequence : 
GTGAGTTCCCACCCTTCATCCGCCGAACCCCCGTTCACGCCGTCGCAAGTGGACTCGAAGCGCCAACTGGATTCGTCCAC
GTCTCAGGATCAGCCTCCGGCGTTCGAGATTCACGACCTGACGGTGGCCTATCAACGTCGCCCGGTCCTCTGGAATGTGG
ATTTGAAGTTGCAACCGGGACGACTGGTGGGAATCATCGGTCCTAACGGAGCGGGCAAAAGCACGTTGATCAAAGCGGCG
CTGGGGCTGATTCCGAAGGTCAACGGTTGGGTCGAGGCGTTCGGTCGTCCCGTCAACCAAGTGAGACGTCGGATTGGGTA
TGTGCCTCAGCGCGAGAGCGTGGATTGGGATTTTCCCATCCGCGTATGCGACGTGGCGTTGATGGGAACCTACCCCAAGC
TCGGCTGGTTCGCTCGACCAGGCCACGCCGAGAAGGAGCGAGCGGCGCGCTGTTTGGAGCGGGTCGGATTGGCCGGCTTG
GAGCACCGTCAAATCGGTGAACTGTCCGGTGGCCAGCAACAACGGGTATTCCTGGCCCGAGCGTTGGCTCAGGAGGCCGA
TCTCTACATCATGGACGAACCGATGGCTGGGGTAGACGCCGCCACCGAGAAAACCATTTTCGAGTTGCTGCGCGACCTGC
GCGACCAAGGCAAAACAGTCGTCGTGGTGCATCACGATCTCCGTAGCGTCCCGGAGATCTTCGACGACGTGGTGATGCTC
AATCTTCGGGTGGTGGCGTATGGTCCCACCGCCTTAGTTTTCAATTCGACCAACCTGGAAAACACTTATCGTGGTCGTTT
GACGATTCTGGAACGTCTCGGTCAGGCGGTCTCGACCAAGCAGCGGACCGAGTGA

Protein sequence : 
MSSHPSSAEPPFTPSQVDSKRQLDSSTSQDQPPAFEIHDLTVAYQRRPVLWNVDLKLQPGRLVGIIGPNGAGKSTLIKAA
LGLIPKVNGWVEAFGRPVNQVRRRIGYVPQRESVDWDFPIRVCDVALMGTYPKLGWFARPGHAEKERAARCLERVGLAGL
EHRQIGELSGGQQQRVFLARALAQEADLYIMDEPMAGVDAATEKTIFELLRDLRDQGKTVVVVHHDLRSVPEIFDDVVML
NLRVVAYGPTALVFNSTNLENTYRGRLTILERLGQAVSTKQRTE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 1e-43 46
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 8e-44 46
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 9e-45 43
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 8e-45 43
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 8e-45 43
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 4e-45 43
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 3e-45 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Isop_1062 YP_004178199.1 ABC transporter-like protein BAC0400 Protein 4e-65 57
Isop_1062 YP_004178199.1 ABC transporter-like protein BAC0440 Protein 4e-48 45
Isop_1062 YP_004178199.1 ABC transporter-like protein BAC0350 Protein 2e-45 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Isop_1062 YP_004178199.1 ABC transporter-like protein VFG0526 Protein 2e-45 43