Gene Information

Name : ANT_09260 (ANT_09260)
Accession : YP_004173560.1
Strain : Anaerolinea thermophila UNI-1
Genome accession: NC_014960
Putative virulence/resistance : Virulence
Product : KDP operon transcriptional regulatory protein KdpE
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1033869 - 1034558 bp
Length : 690 bp
Strand : +
Note : -

DNA sequence : 
ATGAGCGATACCGGTTTGAGAATTCTGGTGGTGGATGATGAACGCGCCATTCGCCGTTACCTGCGTACCTCATTGACTGC
GTTGGGGTATGAAGTGCTGGAAGCCGCTACGGGGAACGAAGCCCTTCAATCCGCGATGACGGAGCATCCCGATATTCTTA
TCCTTGACCTGGGATTGCCGGATATCGACGGGGTGGAGGTGGTACGTCGTATTCGCGAATGGAGCAACGTGCCTATTCTC
ATCCTGTCAGTCCGCGACCGCGAAGATGACAAAGTGGTGGCACTGGACGCCGGTGCGGATGATTACCTGACCAAACCGTT
TGGGATCAAAGAACTGCTTGCGCGTATTCGTGTAGCAATACGCCATCGTACTCCCGATCAGCAGGATACCGTGTTTGAGG
TCGAGGATTTACGGGTAGATTTGGGGAAGCGGGAAGTGTTCGTGCAGGGCAACCGTGTAGCCCTGACACCCACTGAATAC
GACTTAATCAAGGTCCTGGTTCAGCATGCCGGCAGGGTGTTGACCCATAATCAGTTGCTCCGTCAGGTGTGGGGCCCCGC
CTATGAGAACGAAGCCCATTTGTTGCGGGTGAACATCAGCAACCTGAGGCGGAAAATTGAGCCCAACCCCGATCAACCGC
GCTATATCCTGACTGAGCCGGGGGTAGGCTATCGTCTGCGCGAGGATTAA

Protein sequence : 
MSDTGLRILVVDDERAIRRYLRTSLTALGYEVLEAATGNEALQSAMTEHPDILILDLGLPDIDGVEVVRRIREWSNVPIL
ILSVRDREDDKVVALDAGADDYLTKPFGIKELLARIRVAIRHRTPDQQDTVFEVEDLRVDLGKREVFVQGNRVALTPTEY
DLIKVLVQHAGRVLTHNQLLRQVWGPAYENEAHLLRVNISNLRRKIEPNPDQPRYILTEPGVGYRLRED

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0571 NP_814337.1 DNA-binding response regulator Not tested Not named Protein 3e-38 45
ef0091 AAM75294.1 EF0091 Not tested Not named Protein 2e-38 45
SH0031 YP_251946.1 hypothetical protein Not tested SCCmec Protein 2e-28 42
kdpE BAA82188.1 KDP operon transcriptional regulatory protein KdpE Not tested Type-II SCCmec Protein 1e-28 41
kdpE YP_039536.1 response regulator protein Not tested Type-II SCCmec Protein 2e-28 41
kdpE NP_370594.1 transcriptional regulator kdpE Not tested Type-II SCCmec Protein 2e-28 41
kdpE NP_373306.1 hypothetical protein Not tested Type-II SCCmec Protein 2e-28 41
kdeP YP_190033.1 DNA-binding response regulator KdeP Not tested Type-II SCCmec Protein 2e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ANT_09260 YP_004173560.1 KDP operon transcriptional regulatory protein KdpE NC_012469.1.7685629. Protein 2e-31 44
ANT_09260 YP_004173560.1 KDP operon transcriptional regulatory protein KdpE AE015929.1.gene1106. Protein 7e-24 41
ANT_09260 YP_004173560.1 KDP operon transcriptional regulatory protein KdpE BAC0638 Protein 5e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ANT_09260 YP_004173560.1 KDP operon transcriptional regulatory protein KdpE VFG1390 Protein 3e-34 45
ANT_09260 YP_004173560.1 KDP operon transcriptional regulatory protein KdpE VFG1389 Protein 3e-27 43