Gene Information

Name : Deima_3179 (Deima_3179)
Accession : YP_004172472.1
Strain : Deinococcus maricopensis DSM 21211
Genome accession: NC_014958
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0609
EC number : -
Position : 3368115 - 3369122 bp
Length : 1008 bp
Strand : -
Note : COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: dge:Dgeo_0024 transport system permease; PFAM: ABC transporter permease; SPTR: ABC-type Fe3+-siderophore transport system, permease component; PFAM: Fec

DNA sequence :
GTGCAAGACGGGACCCTCACCGCCCGACCCTTCGTCCGCGCCGCGCGCACCCCCCTGCTGCTCGTCGCCCTCGCCCTCAC
CATCCTGTGCGCCATCGCGTTCGGCAGCGTGCACGTGCCCCTCGGCGACGTGCTCCGCGCGCTGTGGCACGGCCTGAACG
GCACCCCCCTCAGCGGCACCGACGTGATCGTCTGGCAGATTCGCCTGCCACGCGTCGTCATGGGCCTGCTGGTCGGCGCC
AGCCTCGCCGTGTGCGGCGGCGCGTACCAGGGCGTCTTCCGCAACCCCCTCGCCGACCCGTACCTGATCGGCGTCGCCAG
CGGCGCCGCGCTCGGCGCCACCGTCAGCATCGTCGCGGAGTGGCCGCGCGCGCTCGTGCCGGTGTTCGCCATGATCGGCG
CGTTCCTGAGCGTCCTCGTGACCCTCGCGCTCGCCCGCGAAGGCCGCCGTTTCCCCCCGAATCGCCTGATTCTCGCGGGC
GTCGTGGTGGGCAGCATCGCCAGCGCCGCCAGCAGCTTCCTGATCCTGCGCGGCGAGGACCGCGCCCGCCAGGTCCTCGC
GTACACCCTCGGTGACCTGTCCTTCAGCGGCTGGCGGGACATCCTCACGGTCCTGCCGTACGCCGTGATCGGCGCCGCCA
CCTTGATGCTGCTCGCCCGCGCGCTGAACACCCTCGCGCTCGGCGACCTCACCGCCCGCAGCCTCGGCGTGCCCGTCGAG
CGCCTGCGCCTGATCATCGTGATCGCCGCGAGCCTCGCCACGGCCGCCGCCGTCAGCTACGTCGGCATCATCGGCTTCGT
CGGTCTGATCGTCCCGCACGTCGTGCGCCGCCTGTGGAGCGCCGACCACCGCGTGCTCCTGCCGGTCAGCGCCGTGGCGG
GCGCGACGCTGCTGGTCCTCGCGGACCTCGTGGCGCGCACCACCTTCCTGTCGCAGGTCGGCATCGTCACCACGCTGATC
GGCGGGCCGTTCTTCCTGTCGCTGCTGCGCCGCGGGAGTCGCCTGTGA

Protein sequence :
MQDGTLTARPFVRAARTPLLLVALALTILCAIAFGSVHVPLGDVLRALWHGLNGTPLSGTDVIVWQIRLPRVVMGLLVGA
SLAVCGGAYQGVFRNPLADPYLIGVASGAALGATVSIVAEWPRALVPVFAMIGAFLSVLVTLALAREGRRFPPNRLILAG
VVVGSIASAASSFLILRGEDRARQVLAYTLGDLSFSGWRDILTVLPYAVIGAATLMLLARALNTLALGDLTARSLGVPVE
RLRLIIVIAASLATAAAVSYVGIIGFVGLIVPHVVRRLWSADHRVLLPVSAVAGATLLVLADLVARTTFLSQVGIVTTLI
GGPFFLSLLRRGSRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CDCE8392_1769 YP_005134303.1 ferrichrome transport system permease protein fhuB Virulence Not named Protein 2e-21 42
cpfrc_01919 YP_003784319.1 hypothetical protein Not tested PiCp 7 Protein 3e-27 42
CpI19_1928 YP_005686352.1 Iron(III) dicitrate transport system permease fecD Virulence PiCp 7 Protein 2e-27 42
Cp1002_1913 YP_005682168.1 Iron(III) dicitrate transport system permease fecD Virulence PiCp 7 Protein 3e-27 42
CpC231_1907 YP_005684260.1 Iron(III) dicitrate transport system permease fecD Virulence PiCp 7 Protein 3e-27 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Deima_3179 YP_004172472.1 ABC transporter VFG0922 Protein 5e-25 41