Gene Information

Name : Deima_0232 (Deima_0232)
Accession : YP_004169560.1
Strain : Deinococcus maricopensis DSM 21211
Genome accession: NC_014958
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 267875 - 268558 bp
Length : 684 bp
Strand : +
Note : COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: dge:Dgeo_2844 two component transcriptional regulator; PFAM: Signal transduction response regulator, re

DNA sequence : 
ATGAAGACGATTCTGGTGGTGGAGGACAACGCGGGCATCCGGGAGATGGTGCGCGAGTACCTCGCCGAGCACGGCTACCG
CGTGCGCGTCGCGTCGAACGGCGTGGAGGGCCTGCTGGAGACGCGGCACCACCCGCCGGACCTGATTCTGCTGGACGTCA
TGATGCCGGGCATGGACGGCTTGGAGTTCCTGCGCAAGTACCGCGCGGACGCCGGCACGCCCGTGATGTTCCTGACCGCG
CGCGACGCGGAACTCGACAAGGTGCTGGGCCTGGAGCTCGGCGCGGACGATTACCTCACGAAGCCGTTCTCGATGGCGGA
ACTGCTCGCGCGCATCCGCGCGCTGCTGCGCCGCGCCGGCGAGAAGCCCACCGGCGGGCCTGTGCGGGTGGGCGTGCTGG
AGCTCGACGCTGCGTCGCGGACGTTCGTGGTGCGCGGGCAGCGGGTGGACCTGACCCGCTCGGAGTTCGAGCTGATGGAC
CTGTTCATGCGGCACCCGCAGCGGGTGTTCACGCGCGTGGAGCTGCTGGAGCACCTGCAGGAGGACTCGGTCGGGTCCGA
GCGGACCATGGACGTGCACGTGCGCAACATCCGCGCGAAAATCGAGGAGGAGCCGGGCAAGCCCCGCCTGATCGAAACGG
TGTTCGGTGTCGGGTACCGCCTGAATCCTGGCGGCGCGCCGTGA

Protein sequence : 
MKTILVVEDNAGIREMVREYLAEHGYRVRVASNGVEGLLETRHHPPDLILLDVMMPGMDGLEFLRKYRADAGTPVMFLTA
RDAELDKVLGLELGADDYLTKPFSMAELLARIRALLRRAGEKPTGGPVRVGVLELDAASRTFVVRGQRVDLTRSEFELMD
LFMRHPQRVFTRVELLEHLQEDSVGSERTMDVHVRNIRAKIEEEPGKPRLIETVFGVGYRLNPGGAP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-24 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Deima_0232 YP_004169560.1 winged helix family two component transcriptional regulator BAC0125 Protein 2e-27 42
Deima_0232 YP_004169560.1 winged helix family two component transcriptional regulator AE000516.2.gene3505. Protein 2e-33 42
Deima_0232 YP_004169560.1 winged helix family two component transcriptional regulator NC_012469.1.7685629. Protein 1e-30 41
Deima_0232 YP_004169560.1 winged helix family two component transcriptional regulator BAC0638 Protein 1e-20 41
Deima_0232 YP_004169560.1 winged helix family two component transcriptional regulator HE999704.1.gene2815. Protein 2e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Deima_0232 YP_004169560.1 winged helix family two component transcriptional regulator VFG1389 Protein 1e-21 43
Deima_0232 YP_004169560.1 winged helix family two component transcriptional regulator VFG1390 Protein 4e-29 42
Deima_0232 YP_004169560.1 winged helix family two component transcriptional regulator VFG0596 Protein 4e-25 41
Deima_0232 YP_004169560.1 winged helix family two component transcriptional regulator VFG1386 Protein 3e-26 41