Gene Information

Name : Deima_1877 (Deima_1877)
Accession : YP_004171188.1
Strain : Deinococcus maricopensis DSM 21211
Genome accession: NC_014958
Putative virulence/resistance : Unknown
Product : pyridoxal biosynthesis lyase pdxS
Function : -
COG functional category : H : Coenzyme transport and metabolism
COG ID : COG0214
EC number : -
Position : 2019025 - 2019933 bp
Length : 909 bp
Strand : -
Note : COGs: COG0214 Pyridoxine biosynthesis enzyme; HAMAP: Vitamin B6 biosynthesis protein; InterPro IPR001852; KEGG: dge:Dgeo_1106 pyridoxal biosynthesis lyase PdxS; PFAM: Vitamin B6 biosynthesis protein; SPTR: Pyridoxal biosynthesis lyase pdxS; TIGRFAM: Vitam

DNA sequence :
ATGACCACCACCCCGCACACCGGCACCCTCCGCGTCAAAACCGGCTTCGCCGAAATGTTCAAAGGCGGCGTCATCATGGA
CGTCGTCACCGCCGAACACGCCCGCATCGCCGAAGCCGCCGGCGCCACCGCCGTCATGGCCCTCGAACGCGTCCCCGCCG
ACATCCGCGTCGACGGCGGCGTCGCCCGCATGAGCGACCCCAAGATGATCAAGGAAATCATCGGCGCGGTCAGCATCCCC
GTCATGGCCAAAGTCCGCATCGGCCACTTTGTCGAAGCGCAGATCCTCCAGGCGCTCGGCGTCGACTTCATCGACGAATC
CGAAGTCCTCACGCCCGCCGACGAGAGCTACCACATCGACAAACACGCCTTCACCGTCCCCTTCGTGAACGGCGCCAAGA
ACCTCGGTGAGGCCCTGCGCCGCGTCGGCGAAGGCGCCAGCATGATCCGCACCAAAGGCGAAGCGGGCACCGGCAACGTC
GTCGAGGCCGTCCGCCACGCCCGCACCGTCCTCGGCGAAATCCGCGCCATCCAGGCCCGCCCCGTCGAGGAACTCATGAC
CGTCGCCCGCGACCTGCAGGCGCCGTACGAACTCGTCCGCTACGTCCACGAACACGGCAAGCTCCCCGTCGTGAACTTCG
CCGCCGGCGGCGTCGCCACGCCCGCCGACGCGGCCCTCATGATGCACCTCGGCCTCGACGGCGTGTTCGTCGGCAGCGGC
ATCTTCAAAAGCGGCGGCGGCGACCTCGGCCAGATCGAGAAACGCGCGCGCGCCATCGTCAAGGCCGTCACGCACTACCA
GAACCCCGACATCCTCGCGGAAATCAGCGAAGACATCGGCGCGCCCATGACCGGCATCAACATCGACAGCCTCATCCCCA
GCGAACGCCTCGCCGAACGCGGCTGGTAA

Protein sequence :
MTTTPHTGTLRVKTGFAEMFKGGVIMDVVTAEHARIAEAAGATAVMALERVPADIRVDGGVARMSDPKMIKEIIGAVSIP
VMAKVRIGHFVEAQILQALGVDFIDESEVLTPADESYHIDKHAFTVPFVNGAKNLGEALRRVGEGASMIRTKGEAGTGNV
VEAVRHARTVLGEIRAIQARPVEELMTVARDLQAPYELVRYVHEHGKLPVVNFAAGGVATPADAALMMHLGLDGVFVGSG
IFKSGGGDLGQIEKRARAIVKAVTHYQNPDILAEISEDIGAPMTGINIDSLIPSERLAERGW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
DIP0227 NP_938620.1 pyridoxal biosynthesis lyase PdxS Not tested Not named Protein 7e-77 66
pdxS YP_005141805.1 pyridoxine biosynthesis protein Not tested Not named Protein 1e-76 66
pdxS YP_005137204.1 pyridoxine biosynthesis protein Not tested Not named Protein 9e-77 65