Gene Information

Name : Deima_1388 (Deima_1388)
Accession : YP_004170703.1
Strain : Deinococcus maricopensis DSM 21211
Genome accession: NC_014958
Putative virulence/resistance : Virulence
Product : ATP-dependent chaperone ClpB
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 1498398 - 1500959 bp
Length : 2562 bp
Strand : -
Note : COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR017730: IPR004176: IPR003959: IPR013093: IPR 019489: IPR003593; KEGG: dge:Dgeo_1210 ATPase AAA-2; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-term

DNA sequence :
ATGAACCCTGAACACCTCACCGAAGCCGCCGTCCAGGCCATCGCCCAGGCGCAACAAGACGCTCTCGGGCGCGGCCATCA
GACGCTCACCCCCACCCACGTCCTGCTCGCCACGCTCGACGCCGACAGCCCCGCCGCGCGCGCCGTCACCCTCGCCGGCG
GCGACCTCAAGGCCGCCCGCAGCGCCCTCGAAGCGGACCTCGCCAAACTCCCCCGCGTTCAGGGTGGCGGCGACCAGATC
TACGGCGACGGCGCCCTCGGCCGCGCCTTTGGCCGCGCCGAAGCCCTCGCCCGCGAATTCGGCGACAGCTTCACCGCCGT
CGACGTCCTCATGCTCGCCCTGCGCGAACAGATCCACAGCGCCGCACTCCCCAACGCCGACGCCCTGCGCGCCGCCATCC
AACAACAACGCAAAGGAAAAACCGTGACCAGCAAAACCGCTGAACAACAATTCGAGGCGCTCGAAAAGTACGGCCTCGAC
CTCACCGCCCGCGCCGCCGAAGGTAAACTCGACCCGGTCATCGGCCGCGACGAGGAAATCCGCCGCACCATGCAGATCCT
CCTGCGCCGCAGCAAAAACAACCCCGTCCTGATCGGCGAACCCGGCGTCGGCAAAACCGCCGTCGCCGAAGGCCTCGCGC
AGCGCATCGTCAAAGGCGACGTCCCGGAAGGCCTCAAAGGCAAACGCATCGTCAGCCTCCAGATGGGCAGCCTCCTCGCC
GGCGCCAAGTACCGCGGCGAATTCGAGGAACGCCTCAAAGGCGTCATTCAGGAAGTCACCGACAGCGCCGGCGAAGTCAT
CCTGTTCATCGACGAGATCCACACCATCGTCGGCGCCGGCAAAGCCGAAGGCGCCGTCGACGCCGGCAACATGCTCAAAC
CCGCCCTCGCACGCGGCGAACTGCACCTGATCGGCGCCACTACCCTCAACGAATACCGCGAAATCGAAAAGGACGCCGCC
CTTGAGCGCCGCTTCCAACCCGTCTTCGTCGAGGAACCCAGCGTCGAGGACACCATCAGCATCCTGCGCGGCATCAAGGA
ACGCTACCAGGTGCACCACAACGTCGAAATCACCGACCCGGCCCTGGTCGCCGCCGCGACTCTCAGCCACCGCTACATCA
GCGACCGCCAGCTGCCCGACAAGGCCATCGACCTGATCGACGAAAGCGCCGCGCGCCTCCGCATGGCCCTCGAAAGCAGC
CCCGAGCGCATTGACGCGCTCGAACGCCGCAAACTCCAGCTGGAAATCGAACGCGAAGCCCTCAAACGCGAAAAAGACCA
GGACAGCCAGAACCGCCTGCTCGACCTCGAGGATCAGCTGCGCACCCTCACCGACGAACTCGGCAGCATTCGCGCCCGCT
GGGAAGCCGAACGCGCCGAAGTGCAGGCTCTGCGCGAGAAACGCGAACAGCTCGACCAGGTCCGCACCGACATCGAAAAA
GCCAAACGCGACTACGACCTCGGCCGCGCCGCGCAACTCGAGTACGGCACCCTCCCGCAACTCGAACGGGAAGTGCAGGA
CCTCGAACGCAAAATGAAAGACGCCGAGTTCGCGCACATGGAAGTCACCGAAGAGGACATCGCCTCCGTCGTGAGCCGCT
GGACCGGCATTCCCGTGAACCGCCTCATGGAAGGCGAACGCGAGAAGCTCCTGCGCCTCGAAGAGGAACTGCACGAACGC
GTCATCGGGCAGGACCGCGCCATCGTCAGCGTCAGCGACGCCATCCGCCGCGCCCGCGCCGGCCTGAACGACCCGAACCG
CCCGCTCGGCAGCTTCATGTTCCTCGGCCCCACCGGCGTCGGCAAAACCGAGCTCGCCAAAGCCCTCGCGGAATTCCTGT
TCGACTCCTCGGACGCCATGGTGCGCCTCGACATGAGCGAGTACATGGAGAAACACACCGTCGCCCGCCTGATCGGCGCC
CCTCCCGGCTACGTCGGCTACGAAGAAGGCGGTCAGCTCACCGAGGCCGTACGCCGCCGCCCGTACAGCGTCATCCTGCT
CGACGAAGTCGAGAAGGCCCACCCGGACGTCTTCAACGTCCTGCTGCAGGTCCTCGACGACGGCCGCCTCACGGACGGCC
AGGGCCGCACCGTGGACTTCCGCAACACGCTCGTCATCATGACCAGCAACATCGGCTCCCCGCTCATCCTCGAAGCGCAG
GCGCGCGGCGAAGACCCCGACGCCATCCGCGACGCCGTCATGGGCGCCCTGCAGGGGAACTTCCGCCCGGAATTCCTGAA
CCGCATCGACGACATCATCGTCTTCGATGCACTCACCAACGCCGACATCCACCGCATCGTGGACATCCAGATGCGCGGCC
TGGTCAAACGCCTCGCGGAACGCCGCATCACCGTGCACCTCACGGACACCGCCAAGGACCACCTCGCGCGCGTCGGGTAC
GACCCGAACTTCGGCGCGCGCCCCCTCAAGCGCGCCATCGCCCGCGAAGTGGAAACGCCGCTCGCCCGCGAGATCCTGTC
CGGCCGCGTCGCGGACGGCAGCAGCCTCACGGTTGACTATCTCGACGGCCGCATCCACTTCGACAGCGCCCCCCTCAACT
GA

Protein sequence :
MNPEHLTEAAVQAIAQAQQDALGRGHQTLTPTHVLLATLDADSPAARAVTLAGGDLKAARSALEADLAKLPRVQGGGDQI
YGDGALGRAFGRAEALAREFGDSFTAVDVLMLALREQIHSAALPNADALRAAIQQQRKGKTVTSKTAEQQFEALEKYGLD
LTARAAEGKLDPVIGRDEEIRRTMQILLRRSKNNPVLIGEPGVGKTAVAEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA
GAKYRGEFEERLKGVIQEVTDSAGEVILFIDEIHTIVGAGKAEGAVDAGNMLKPALARGELHLIGATTLNEYREIEKDAA
LERRFQPVFVEEPSVEDTISILRGIKERYQVHHNVEITDPALVAAATLSHRYISDRQLPDKAIDLIDESAARLRMALESS
PERIDALERRKLQLEIEREALKREKDQDSQNRLLDLEDQLRTLTDELGSIRARWEAERAEVQALREKREQLDQVRTDIEK
AKRDYDLGRAAQLEYGTLPQLEREVQDLERKMKDAEFAHMEVTEEDIASVVSRWTGIPVNRLMEGEREKLLRLEEELHER
VIGQDRAIVSVSDAIRRARAGLNDPNRPLGSFMFLGPTGVGKTELAKALAEFLFDSSDAMVRLDMSEYMEKHTVARLIGA
PPGYVGYEEGGQLTEAVRRRPYSVILLDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLVIMTSNIGSPLILEAQ
ARGEDPDAIRDAVMGALQGNFRPEFLNRIDDIIVFDALTNADIHRIVDIQMRGLVKRLAERRITVHLTDTAKDHLARVGY
DPNFGARPLKRAIAREVETPLAREILSGRVADGSSLTVDYLDGRIHFDSAPLN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 1e-106 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Deima_1388 YP_004170703.1 ATP-dependent chaperone ClpB VFG2084 Protein 4e-105 43
Deima_1388 YP_004170703.1 ATP-dependent chaperone ClpB VFG2076 Protein 4e-114 42