Gene Information

Name : Bache_1003 (Bache_1003)
Accession : YP_004160601.1
Strain : Bacteroides helcogenes P 36-108
Genome accession: NC_014933
Putative virulence/resistance : Virulence
Product : ABC transporter related protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1289091 - 1289810 bp
Length : 720 bp
Strand : +
Note : COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439: IPR003593: IPR017871; KEGG: bth:BT_1466 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter, ATP-b

DNA sequence : 
ATGATGATTAGAACAGAAAAACTATCTATGCTTTTTACGACGGAAGAGGTACAGACAAAAGCTTTGAATGAGATTACCTT
ACATGTGGAACAGGGAGAATTCGTAGCAATAATGGGGCCTTCGGGATGTGGTAAATCCACTTTGCTGAATATTTTGGGTA
CGTTGGACTCTCCCAGTTCCGGTTCTTATTTTTTTGAAGGCAAGCAAGTGGACAAGATGAGTGAAAACCGGCTGACTGCT
CTCCGTAAGGGTAATCTGGGCTTTATTTTCCAGAGCTTCAATCTGATTGATGAACTTACCGTGTACGAGAATGTGGAACT
TCCACTGCTCTATCTGGGGGTCAAGGCTTTGCGGCGCAAGGAACGGGTGAATAAGGTGCTGGAAAGAGTGAATCTCCTGC
ACCGTGCCCGCCATTATCCCCAACAGCTTTCGGGAGGTCAACAGCAGCGAGTAGCCATCGCCCGTGCCGTGGTGACAGAC
TGTAAATTGCTGCTTGCCGATGAGCCTACGGGAAACCTTGACTCTGCCAATGGCGTGGAAGTTATGGAACTTCTTGGGGA
GCTGAACCGTCAGGGTACTACCATTATCATTGTGACCCATTCCCAGAGGGATGCGATGTATGCCCATCGTATCATTCAAT
TACTGGACGGACAGATTGTGGCCGAAAGCATCAACCGTCCGCTGGAAAGAAATGTTTCATCTGAACTCGAAAACGTATGA

Protein sequence : 
MMIRTEKLSMLFTTEEVQTKALNEITLHVEQGEFVAIMGPSGCGKSTLLNILGTLDSPSSGSYFFEGKQVDKMSENRLTA
LRKGNLGFIFQSFNLIDELTVYENVELPLLYLGVKALRRKERVNKVLERVNLLHRARHYPQQLSGGQQQRVAIARAVVTD
CKLLLADEPTGNLDSANGVEVMELLGELNRQGTTIIIVTHSQRDAMYAHRIIQLLDGQIVAESINRPLERNVSSELENV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-32 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-33 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-33 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-33 42
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 2e-31 42
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 4e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Bache_1003 YP_004160601.1 ABC transporter related protein NC_008702.1.4606598. Protein 3e-41 51
Bache_1003 YP_004160601.1 ABC transporter related protein CP001581.1.gene798.p Protein 3e-39 49
Bache_1003 YP_004160601.1 ABC transporter related protein NC_012469.1.7686878. Protein 3e-51 49
Bache_1003 YP_004160601.1 ABC transporter related protein CP001581.1.gene598.p Protein 6e-37 43
Bache_1003 YP_004160601.1 ABC transporter related protein NC_012469.1.7686946. Protein 9e-30 42
Bache_1003 YP_004160601.1 ABC transporter related protein NC_012469.1.7685735. Protein 9e-34 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Bache_1003 YP_004160601.1 ABC transporter related protein VFG0869 Protein 8e-21 42