Gene Information

Name : sitC (BARCL_0096)
Accession : YP_004158373.1
Strain : Bartonella clarridgeiae 73
Genome accession: NC_014932
Putative virulence/resistance : Virulence
Product : Iron transport protein, inner membrane component
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 105113 - 105976 bp
Length : 864 bp
Strand : +
Note : -

DNA sequence : 
ATGATTGCTTGGTTGCTTGAGCCTTTTACTTATCAATATATGATTAATGCAATGTGGGTTTCAGGGTTAGTTGGCTGTGT
TTGTGCCTTTCTTTCTGCTTTTTTAATGTTAAAAGGTTGGTCATTGATTGGTGATGCGCTTTCCCATTCGATTGTACCTG
GAGTTGCTGGGGCTTATCTTTTAGGACTACCTTTTTCTTTTGGAGCTTTTTTTTCTGGCGGGCTTGCTGCTGCAGCAATG
TTATTTTTAAATTACAGAACAAAACTAAAAGAAGATACAATTATTGGTTTAATTTTTTCTTCCTTTTTTGCGTTTGGATT
ATTTCTGAAATCACTAAGACCAATGTCTGTTAATATTGATACGATTGTTCTTGGAAATATTTTAGCAGTTAGTTCATCAG
ATATTATGCAGTTGGCTTGTATTGGATTCTTTTCCCTTTTTATATTGTGTATAAAATGGAAAGACTTATTGGTCTTTTTA
TTTGATGAGAGTCATGCACACGCTATTGGATTAAATATCACGTTATTAAAAATTCTCTTTTTTACACTTCTTGCTGCTTG
TACTGTTGCGGCTATGCAGACAGTAGGAGCTTTTTTAGTTATTTGTCTTGTGATTACACCGGGGGCAACTGCTTATCTTT
TAACTGATCGTTTTGTAAATCTTTTGATCATTGCAGTTATGATTGGAACCCTTACAAGTATCTTGGGTGTTTATATGAGT
TATTTTCTAAACGCGCAAACCGGTGGTGTTGTTGTGCTTTTTCAAACATTTTTATTTATGGTAGCCTTTACTTTTGCTCC
TAAACACGGTTACATTGCTGCACGCTTACGTGTGAGAACAGCAAAAAGGTGTAGCGATATATGA

Protein sequence : 
MIAWLLEPFTYQYMINAMWVSGLVGCVCAFLSAFLMLKGWSLIGDALSHSIVPGVAGAYLLGLPFSFGAFFSGGLAAAAM
LFLNYRTKLKEDTIIGLIFSSFFAFGLFLKSLRPMSVNIDTIVLGNILAVSSSDIMQLACIGFFSLFILCIKWKDLLVFL
FDESHAHAIGLNITLLKILFFTLLAACTVAAMQTVGAFLVICLVITPGATAYLLTDRFVNLLIIAVMIGTLTSILGVYMS
YFLNAQTGGVVVLFQTFLFMVAFTFAPKHGYIAARLRVRTAKRCSDI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-70 70
sitC NP_461784.1 permease Virulence SPI-1 Protein 1e-70 70
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-70 70
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-70 70
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 1e-70 70
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-34 43
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-34 43
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-34 42
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-34 42
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-34 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitC YP_004158373.1 Iron transport protein, inner membrane component BAC0351 Protein 7e-71 70
sitC YP_004158373.1 Iron transport protein, inner membrane component BAC0441 Protein 4e-64 61
sitC YP_004158373.1 Iron transport protein, inner membrane component BAC0352 Protein 8e-35 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitC YP_004158373.1 Iron transport protein, inner membrane component VFG0527 Protein 6e-71 70
sitC YP_004158373.1 Iron transport protein, inner membrane component VFG0528 Protein 8e-35 43