|
Name : Varpa_0638 (Varpa_0638) Accession : YP_004152970.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Unknown Product : nusg antitermination factor Function : - COG functional category : K : Transcription COG ID : COG0250 EC number : - Position : 710143 - 710754 bp Length : 612 bp Strand : + Note : TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain-containing protein; KOW domain protein; KEGG: vap:Vapar_0583 NusG antitermination factor; SMART: NGN domain-containing protein; KOW domain protein DNA sequence : ATGACCGACGACGTAGTTGAAACCACGCCGAGCGCGCCCGAGGAAGAAAACACCTCCGTGCTGGCTCCCGCCGCCAACCC TGATCTGCGTTGGTACGTGGTGCATGCCTATTCGGGCATGGAGAAGGCCGTCGAGCGCAACATCACCGAGCGCATCAACC GCGCCGGCATGCAAGACAAGTTCGGCCGCATCCTGGTCCCGACCGAAGAAGTGGTCGAGATCAAGAACGGCCAGAAGCGC ACCACCGAGCGCCGCTTCTTCCCAGGCTACGTGCTGGTCGAAATGATCATGGACGACGAGAGCTGGCACTTGGTGAAGCA CACCAACAAGGTGACCGGTTTCGTGGGCGGCGCCAAGAACCGTCCGGCCCCGATCTCGCAGAAAGAGGTCGAGGACATCG TCAGCCAGATGCAGCAGGGCACCGAGAAGCCGCGCCACAAGGTCGAGTTCACCGTTGGCGAATTCGTGCGCGTCAAGGAA GGCCCGTTCACCGACTTCAATGGCACGGTGGAAGACGTCAATTACGAGAAGAGCAAGGTCAGCGTGTCGGTCATGATTTT CGGCCGCTCCACGCCCGTCGAGCTCGAATTCAGCCAGGTCGAGAAGACCTGA Protein sequence : MTDDVVETTPSAPEEENTSVLAPAANPDLRWYVVHAYSGMEKAVERNITERINRAGMQDKFGRILVPTEEVVEIKNGQKR TTERRFFPGYVLVEMIMDDESWHLVKHTNKVTGFVGGAKNRPAPISQKEVEDIVSQMQQGTEKPRHKVEFTVGEFVRVKE GPFTDFNGTVEDVNYEKSKVSVSVMIFGRSTPVELEFSQVEKT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00341 | YP_008207806.1 | Transcription antiterminator | Not tested | AbaR25 | Protein | 2e-52 | 56 |
| BJAB0868_00345 | YP_008211671.1 | Transcription antiterminator | Not tested | AbaR26 | Protein | 2e-52 | 56 |
