Gene Information

Name : Varpa_0626 (Varpa_0626)
Accession : YP_004152958.1
Strain : Variovorax paradoxus EPS
Genome accession: NC_014931
Putative virulence/resistance : Unknown
Product : phosphoglycolate phosphatase
Function : -
COG functional category : R : General function prediction only
COG ID : COG0546
EC number : -
Position : 699227 - 700036 bp
Length : 810 bp
Strand : +
Note : KEGG: vap:Vapar_0571 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase

DNA sequence :
ATGCGGGGCGTGCAGCTGGAGCAGTGCGCATCCCGACCACGATTTCACTCGCTTGCCCTGCAGTTCTTTTTGGGGCCAGT
AAAGTACCGGGCACTTTTTGAACTCCGCTTGCTTGCTTTGAACTCCACCAGCCTCGACCTCATTTATTTCGATGCCGCCA
TCGTCGACCTCGACGGCACCATGGTCGACACGCTCGGCGATTTCGCCGAGTCCCTGAACCGCATGCTGCGCGACCTCGAC
CTGCCGCCGGTGGCGCCCGCCGCCATCGAACGGATGGTGGGCAAGGGCTCCGAGCACCTGATTCACTCGGCGCTCGTGCA
TGTCATGACGCCCGCCGGCGCGGTCGATGTCCAGGCCAGGGCACAGGCGCTCTTCGAGCGCGCCTGGGACCGTTACCAGC
ACCACTACCTGGCGATCAACGGCCAACACTCGGCGTTGTACCCGGGGGTGATCGAGGGGCTGAATGCGTTGCGCGCGCGG
GGCTTGCGGCTGGCCTGCCTCACCAACAAGCCGACCTCGTTCGCCAGACCGCTGCTGGCCGCGAAAGGTCTGGATGGTTT
CTTCGAGCTGGTGTTCGGTGGCGATGCCTTCGAGCGCAAGAAGCCCGATCCGCTGCCGCTCCTGAAGACCTGCGAGGCGC
TGTGCACGGTGCCGGCGCGCACGTTGATGGTCGGCGACTCGAGCAACGATGCGCGCGCCGCAAGGGCCGCCGGTTGCCCG
GTCGTGCTCGTGACCTACGGCTACAACCACGGCGAGCCGGTGCGCGGCGTGGATGCGGACGGCTTCGTGGATTCGTTGGC
CGATCTCTAG

Protein sequence :
MRGVQLEQCASRPRFHSLALQFFLGPVKYRALFELRLLALNSTSLDLIYFDAAIVDLDGTMVDTLGDFAESLNRMLRDLD
LPPVAPAAIERMVGKGSEHLIHSALVHVMTPAGAVDVQARAQALFERAWDRYQHHYLAINGQHSALYPGVIEGLNALRAR
GLRLACLTNKPTSFARPLLAAKGLDGFFELVFGGDAFERKKPDPLPLLKTCEALCTVPARTLMVGDSSNDARAARAAGCP
VVLVTYGYNHGEPVRGVDADGFVDSLADL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00337 YP_008207802.1 putative phosphatase Not tested AbaR25 Protein 3e-23 42
BJAB0868_00341 YP_008211667.1 putative phosphatase Not tested AbaR26 Protein 3e-23 42