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Name : Varpa_0602 (Varpa_0602) Accession : YP_004152934.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Virulence Product : winged helix family two component transcriptional regulator Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG0745 EC number : - Position : 670366 - 671049 bp Length : 684 bp Strand : - Note : KEGG: rsl:RPSI07_mp1421 DNA-binding response regulator in two-component system; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver DNA sequence : ATGAACATCCTGGTGGTCGAAGACGACGCGCGCGTCGCCGACTTTTTACAGAGAGGCCTCGGCGCCGAGGGCTACCGCGT GCAGCTGGCCCGCACCGGACCCGAAGGCCTGGCTCTGGCGCGCGGCAGCGACCTTTCACTGCTGCTGCTCGACCTGATGC TTCCCGGCCTGAGCGGCCTGGAGCTCTGCCAGACCTTGCGCGCCGAGGGCCACCACGTGCCCGTGCTGATGCTCACGGCG CTCAGCAACACGCAGGACAAGGTGAGCGGCCTGCGCCTGGGCGCGGACGACTACCTCACCAAGCCCTTTGCCTTCGAGGA GCTGCTCGCGCGCATCGAGGCGCTGCTGCGCCGCGGCCGCGAAATGCGGCCCCGCGCCACCACGCTGCAGGTGGCGGACC TCGTGCTCGACCGCGAGCGCATGTCGGTGACGCGGGCCGGCAAGCCCGTGGCGCTGACCGCCAAGGAGCTCGCGTTCCTC GAGCTGCTGATGACCGCGCCCGGCCGGGTCTACAGCCGCGAACGCATCCTCTCCAATGTCTGGGGCACCAACGAAGATCC GCTGACCAACATCGTCGACGTCTATGTGCGGCGCCTGCGCGGCAAGATCGACGACGGCCATCCCGTGGCGTTGTTGCAGA CGGTCCGCGGCCTGGGCTATCGGCTGGACCCCACCCCGGCCTGA Protein sequence : MNILVVEDDARVADFLQRGLGAEGYRVQLARTGPEGLALARGSDLSLLLLDLMLPGLSGLELCQTLRAEGHHVPVLMLTA LSNTQDKVSGLRLGADDYLTKPFAFEELLARIEALLRRGREMRPRATTLQVADLVLDRERMSVTRAGKPVALTAKELAFL ELLMTAPGRVYSRERILSNVWGTNEDPLTNIVDVYVRRLRGKIDDGHPVALLQTVRGLGYRLDPTPA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| copR | NP_460069.2 | transcriptional regulatory protein YedW | Not tested | SPI-5 | Protein | 5e-25 | 46 |
| copR | AAC33719.1 | regulatory protein CopR | Not tested | SPI-5 | Protein | 3e-24 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Varpa_0602 | YP_004152934.1 | winged helix family two component transcriptional regulator | BAC0308 | Protein | 4e-29 | 50 |
| Varpa_0602 | YP_004152934.1 | winged helix family two component transcriptional regulator | BAC0083 | Protein | 2e-30 | 49 |
| Varpa_0602 | YP_004152934.1 | winged helix family two component transcriptional regulator | BAC0638 | Protein | 5e-24 | 49 |
| Varpa_0602 | YP_004152934.1 | winged helix family two component transcriptional regulator | BAC0125 | Protein | 2e-28 | 47 |
| Varpa_0602 | YP_004152934.1 | winged helix family two component transcriptional regulator | BAC0111 | Protein | 3e-29 | 47 |
| Varpa_0602 | YP_004152934.1 | winged helix family two component transcriptional regulator | BAC0197 | Protein | 2e-25 | 46 |
| Varpa_0602 | YP_004152934.1 | winged helix family two component transcriptional regulator | BAC0347 | Protein | 2e-25 | 46 |
| Varpa_0602 | YP_004152934.1 | winged helix family two component transcriptional regulator | HE999704.1.gene1528. | Protein | 3e-22 | 44 |
| Varpa_0602 | YP_004152934.1 | winged helix family two component transcriptional regulator | Y16952.3.orf35.gene. | Protein | 1e-18 | 44 |
| Varpa_0602 | YP_004152934.1 | winged helix family two component transcriptional regulator | NC_013450.8614146.p0 | Protein | 2e-22 | 43 |
| Varpa_0602 | YP_004152934.1 | winged helix family two component transcriptional regulator | NC_002951.3238224.p0 | Protein | 2e-22 | 43 |
| Varpa_0602 | YP_004152934.1 | winged helix family two component transcriptional regulator | NC_007793.3914065.p0 | Protein | 2e-22 | 43 |
| Varpa_0602 | YP_004152934.1 | winged helix family two component transcriptional regulator | NC_002758.1121390.p0 | Protein | 2e-22 | 43 |
| Varpa_0602 | YP_004152934.1 | winged helix family two component transcriptional regulator | NC_010079.5776364.p0 | Protein | 2e-22 | 43 |
| Varpa_0602 | YP_004152934.1 | winged helix family two component transcriptional regulator | NC_002952.2859858.p0 | Protein | 2e-22 | 43 |
| Varpa_0602 | YP_004152934.1 | winged helix family two component transcriptional regulator | NC_007622.3794948.p0 | Protein | 2e-22 | 43 |
| Varpa_0602 | YP_004152934.1 | winged helix family two component transcriptional regulator | NC_003923.1003417.p0 | Protein | 2e-22 | 43 |
| Varpa_0602 | YP_004152934.1 | winged helix family two component transcriptional regulator | AE015929.1.gene1106. | Protein | 2e-18 | 41 |
| Varpa_0602 | YP_004152934.1 | winged helix family two component transcriptional regulator | NC_012469.1.7686381. | Protein | 1e-19 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Varpa_0602 | YP_004152934.1 | winged helix family two component transcriptional regulator | VFG0596 | Protein | 2e-25 | 46 |
| Varpa_0602 | YP_004152934.1 | winged helix family two component transcriptional regulator | VFG1390 | Protein | 2e-27 | 45 |
