|
Name : Varpa_6015 (Varpa_6015) Accession : YP_004158278.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Virulence Product : kpsf/gutq family protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0794 EC number : 5.3.1.13 Position : 6540962 - 6541963 bp Length : 1002 bp Strand : - Note : SMART: CBS domain containing protein; TIGRFAM: KpsF/GutQ family protein; KEGG: vap:Vapar_5294 KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein DNA sequence : ATGAGTTCCCGCCCCGCCCCGGCCCCCGTGGTCGACCCCGAAGCCATCCTCGCTCGGGCACGCCTGACCTTCGACATCGA AGCCGAAGCCGTCCTCGGTCTGAAGACCCGCGTCGGCCCCAGCTTCGTCGACGCGGTGCGCAAGATCCTCGAAGTGCGCG GCCGCGTGGTCGTGATGGGCATGGGCAAGAGCGGCCACGTCGGCCGCAAGATCGCCGCCACCCTCGCCTCCACCGGCACG CCCGCGATGTTCGTGCACCCGGCCGAGGCCAGCCATGGCGACCTCGGGATGATCAAGGCGGTCGACCTGGTGCTGGCGAT TTCCAACAGCGGCGAGGTCGAGGAATTGACCGTGATCCTGCCCGTGGTCAAGCGCCAGGGCGTGCCGCTGATCGCCATCA CCGGCCGCGCCGATTCGACGCTCGGGCGCCATGCCGACATCACGCTCGACGCGGGCGTCTCCAAGGAAGCCTGCCCCCTC AACCTCGCCCCCACCGCGAGCACCACCGCCCAGATGGCGATGGGCGACGCGCTGGCCGTGGCGCTGCTCGATGCGCGCGG CTTCGGGTCGGAAGATTTCGCGCGTTCGCACCCCGGTGGCGCGTTGGGCCGCAAGCTCCTGACCCACGTGAGCGACGTGA TGCGCTCGGACGCCGAAGTGCCCCGCGTCGCGCCCACCGCCACCTTGAGCGAGCTGATGCGCGAGATGAGTTCCAAGGGC CTCGGCGCCACCGCCGTGGTCGATGCCGAAGGCCGCGCGATCGGCATCTTCACCGACGGCGATCTGCGCCGGAAGGTCGA GACCGGCGCCGACCTGCGCGCCCTGACGGCAGCCGATGTCATGCATCCGGGTCCCCGCACGCTGCGCGCCGATGCGCTGG CCGTCGAGGCGGCCGATCTGATGGAAAACCACCGCATCACCAGCGTGCTGGTGGTCGACGCGGCGGGCCTCTTGATCGGC GCGCTGAGCATCAACGACCTGATGCGCGCGAAAGTCATCTGA Protein sequence : MSSRPAPAPVVDPEAILARARLTFDIEAEAVLGLKTRVGPSFVDAVRKILEVRGRVVVMGMGKSGHVGRKIAATLASTGT PAMFVHPAEASHGDLGMIKAVDLVLAISNSGEVEELTVILPVVKRQGVPLIAITGRADSTLGRHADITLDAGVSKEACPL NLAPTASTTAQMAMGDALAVALLDARGFGSEDFARSHPGGALGRKLLTHVSDVMRSDAEVPRVAPTATLSELMREMSSKG LGATAVVDAEGRAIGIFTDGDLRRKVETGADLRALTAADVMHPGPRTLRADALAVEAADLMENHRITSVLVVDAAGLLIG ALSINDLMRAKVI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsF | AAZ04466.1 | polysialic capsule transport protein | Virulence | PAI I APEC-O1 | Protein | 1e-53 | 50 |
| kpsF | YP_854329.1 | polysialic acid capsule synthesis protein KpsF | Not tested | PAI I APEC-O1 | Protein | 2e-53 | 50 |
| kpsF | CAE85210.1 | KpsF protein | Virulence | PAI V 536 | Protein | 5e-54 | 45 |
