|
Name : Varpa_5974 (Varpa_5974) Accession : YP_004158237.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Unknown Product : transketolase Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG0021 EC number : - Position : 6491726 - 6493840 bp Length : 2115 bp Strand : - Note : KEGG: vap:Vapar_5259 transketolase; TIGRFAM: transketolase; PFAM: Transketolase domain-containing protein; Transketolase central region DNA sequence : ATGGCAAACCACGCCCTGATGGCCAACGCAATCCGCGCTCTGGCTATGGATGCCGTCCAACAAGCAAATTCCGGCCATCC CGGTGCACCGATGGGCATGGCCGACATGGCCGTCGCACTCTGGGGCGATCACCTGCGCTACAACCCGGCCAACCCGCACT GGTTCGACCGCGACCGCTTCGTGCTCTCCAACGGCCACGCCTCGATGCTGCTGTATTCGGTGCTGCACCTCACGGGCTAC GACCTCCCGATCGGCGAGATCAAGAACTTCCGCAAGCTCCACAGCAAGACCGCCGGCCACCCCGAAGTCGACGTGACCCC CGGCGTGGAAACCACCACCGGCCCGCTGGGCCAGGGCATCACCAACGCGGTCGGCTTCGCACTGGCTGAAAAGCTGCTCG CGGCCGAGTTCAACCGCCAAGATGGCAAGGTGAACCACGACATCGTCGACCACCACACCTACGCCTTCCTCGGCGACGGT TGCATGATGGAAGGCATCAGCCACGAAGCCTGCGCCCTGGCCGGCGCCTGGCACCTGAACAAGCTGATCGCGCTGTACGA CGACAACGGCATCAGCATCGACGGCCAGGTGAAGCCCTGGTTCATCGACAACACCGAAGAGCGCTTCAAGGCCTACGGCT GGAACGTCATCGGCCCGATCGACGGCAACGACGCCAAGGACGTGTCCAAGGCCATCGCCAAGGCGAAGAAGGAAGAATCC AAGCCCACGCTGATCATCTGCAAGACGACCATCGGCAAGGGCAGCCCGAACCGCGCGGGCACCGCCAAGGCGCACGGCGA GGCGCTCGGCGCCGAGGAAATCACCCTCACCCGCGAAGCCATCGGCTGGCCCTACCCCGCCTTCGAAATCCCGGCCGAGG TGTACGCCGACTGGGACCACAAGGACGCCGGCGCCAAGACCGAAGCCGCCTGGAACGAGAAGTTCGCCGCCTACGCCGTG GCCTTCCCCGACCTGGCCGGCGAGTTCACCCGCCGCATGAAGGGCGAGCTGCCCAAGAACTTCCACCAGGTCGCCTTCGA CACCGTGGTCGCCGCCCACACCAAGGGCGAGACCGTCGCCAGCCGCAAGGCCAGCCAGCTCGCGCTGGAAGCCTTCACGG CCGCGCTGCCCGAAATGCTCGGCGGCAGCGCCGACCTGACCGGCTCGAACCTCACCAACACCAAGAGCACCGCCGCCCTG CGCTTCGACGCAAAGACCGGTGCCGTGGTCATGAACGTGCCGGCCGTCCCGGCCAAGCAAGGCGCCGAAGACGAAGCCAA GCCCGAAGCTCCGGCCGAAGTGCCGCACGGCACCATCGGCCGCCACATCAACTACGGCGTGCGCGAGTTCGGCATGGCGG CCATCATGAACGGCGTGGCGCTGCATGGCGGCTACATCCCCTACGGCGGCACCTTCCTCACCTTCAGCGACTACAGCCGC AACGCCATCCGCATGGCCGCGCTCATGAAGCGCCGCGTGATCCACGTGTTCACGCACGACTCCATCGGCCTCGGCGAAGA CGGCCCGACGCACCAGTCGATCGAGCACGCCGCCTCGCTGCGCCTGATTCCGAACCTGGACGTCTGGCGTCCGGGCGACA CGGCCGAAACCGCCGTGGCCTGGGCCGTGGCCCTGCAGAACCAGTCGCGCCCGACCGCGCTGCTGCTGAGCCGCCAGAAC ATCGCCTACGCACCGAAGAGCGAACTCGGCGACATCAGCCGTGGCGCCTACGTGCTGTCCGAGCCCGAGACCGTGGGCCT CAAGAGCAAGAAGACGGCCGCCGTCATCATCGCCACCGGTTCCGAAGTGCCGCTCGCGCTGGCTGCCCAGAAGCTCCTGG CCGCCAAGAAGATCGCAGTGCGCGTGGTGTCGATGCCCTCGACCACCACCTTCGACCGCCAGGATGTCGCCTACAAGAAG GCCGTGCTGCCAAAGAAGATTCCGCGCATCGCCGTCGAGATGGGCTGCACCGGCGGCTGGTGGAAGTACGGCTGCGCGGC CGTCGTCGGCATCGACACGTACGGCGAATCGGCACCGGCGCCGGAGCTGTTCAAACATTTCGGATTCACGGCGGAGAACG TCGCCGCCACCGTGGAAGCGGCGCTGCGGGACTGA Protein sequence : MANHALMANAIRALAMDAVQQANSGHPGAPMGMADMAVALWGDHLRYNPANPHWFDRDRFVLSNGHASMLLYSVLHLTGY DLPIGEIKNFRKLHSKTAGHPEVDVTPGVETTTGPLGQGITNAVGFALAEKLLAAEFNRQDGKVNHDIVDHHTYAFLGDG CMMEGISHEACALAGAWHLNKLIALYDDNGISIDGQVKPWFIDNTEERFKAYGWNVIGPIDGNDAKDVSKAIAKAKKEES KPTLIICKTTIGKGSPNRAGTAKAHGEALGAEEITLTREAIGWPYPAFEIPAEVYADWDHKDAGAKTEAAWNEKFAAYAV AFPDLAGEFTRRMKGELPKNFHQVAFDTVVAAHTKGETVASRKASQLALEAFTAALPEMLGGSADLTGSNLTNTKSTAAL RFDAKTGAVVMNVPAVPAKQGAEDEAKPEAPAEVPHGTIGRHINYGVREFGMAAIMNGVALHGGYIPYGGTFLTFSDYSR NAIRMAALMKRRVIHVFTHDSIGLGEDGPTHQSIEHAASLRLIPNLDVWRPGDTAETAVAWAVALQNQSRPTALLLSRQN IAYAPKSELGDISRGAYVLSEPETVGLKSKKTAAVIIATGSEVPLALAAQKLLAAKKIAVRVVSMPSTTTFDRQDVAYKK AVLPKKIPRIAVEMGCTGGWWKYGCAAVVGIDTYGESAPAPELFKHFGFTAENVAATVEAALRD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tktA | AAO17218.1 | TktA | Not tested | tcd island | Protein | 5e-175 | 57 |
| APECO1_2641 | YP_859417.1 | transketolase | Not tested | Not named | Protein | 2e-166 | 53 |
