Gene Information

Name : Varpa_5943 (Varpa_5943)
Accession : YP_004158206.1
Strain : Variovorax paradoxus EPS
Genome accession: NC_014931
Putative virulence/resistance : Resistance
Product : hypothetical protein
Function : -
COG functional category : S : Function unknown
COG ID : COG2510
EC number : -
Position : 6463013 - 6463903 bp
Length : 891 bp
Strand : +
Note : PFAM: protein of unknown function DUF6 transmembrane; KEGG: ara:Arad_4435 transporter

DNA sequence : 
ATGACCACCAGCCGAACCACCGACGTTCTCCTTACTGCCGCCGCGCCCGCCATCTGGGGCAGCACCTACATCGTCACCAC
GGAACTCCTGCCACCGAACTACCCGCTGACGGTCGCGCTGCTGCGCGCGTTGCCCGCGGGATTGCTGCTGCTGCTGATCG
TCCGTCAACTGCCCGAGCGCGCGTGGTGGGGCCGCATCTTCGTGCTCGGCGCGCTGAACTTCTCGATCCTCTGGGCGATG
CTGTTCGTCGCGGCCTACCGGCTGCCGGGCGGCGTTGCGGCGACGATCACTTCGGTGCAACCGCTCTTCGTTGTGTTCCT
TGCAAGCGTGCTCCTCGGCTCGCCGATACGCGCGCTGTCGATCGCGGCGGCGGTGGTCGGCATCGGCGGCGTCGCGCTGC
TGGTGCTCACGCCGAATGCAGCGCTCGATGCGCTCGGCATTGCCGCGGCGGTGGCAGGCGCGGTGTCGATGGCCTTCGGC
ACGGTGCTCGCCCGCCGCTGGCAGCCGCCGGTTTCAGCGCTGGTCTTCACCGCATGGCAGCTCACCGCGGGCGGGCTCCT
GCTGCTGCCGTTCGCACTGCTGCTGGAGCCGCCGCTGCCCGCGCTTACCGCGCAAAACTGGATCGGCTTCGCATGGCTTG
GCCTCGTGGGCGCCGCGCTCACCTACATCGTGTGGTTCCGCGGCGTGGCGCGGCTGGAGCCTTCGGCGGTAGCGCCGCTG
GCCTTCCTGAGCCCGGTGACGGCGGTGATCCTGGGCTGGGCGCTGCTGGATCAGCGCCTCTCGGTGCCGCAGATCGCGGG
CATCGGCATCGTGATCGCGAGCATCTGGATGAGCCAGCATGCACAGCGCGGCGCGCGGCCGACGGTGCTCGCGAAACCCG
CGGCGCGCTAG

Protein sequence : 
MTTSRTTDVLLTAAAPAIWGSTYIVTTELLPPNYPLTVALLRALPAGLLLLLIVRQLPERAWWGRIFVLGALNFSILWAM
LFVAAYRLPGGVAATITSVQPLFVVFLASVLLGSPIRALSIAAAVVGIGGVALLVLTPNAALDALGIAAAVAGAVSMAFG
TVLARRWQPPVSALVFTAWQLTAGGLLLLPFALLLEPPLPALTAQNWIGFAWLGLVGAALTYIVWFRGVARLEPSAVAPL
AFLSPVTAVILGWALLDQRLSVPQIAGIGIVIASIWMSQHAQRGARPTVLAKPAAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pecM ACN81012.1 PecM Not tested AbaR5 Protein 3e-57 63
pecM CAJ77067.1 Regulatory protein Not tested AbaR1 Protein 3e-57 63
pecM AGK07028.1 PecM Not tested SGI1 Protein 3e-57 63
pecM AGK07086.1 PecM Not tested SGI1 Protein 3e-57 63