Gene Information

Name : Varpa_5872 (Varpa_5872)
Accession : YP_004158135.1
Strain : Variovorax paradoxus EPS
Genome accession: NC_014931
Putative virulence/resistance : Virulence
Product : two component LuxR family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG4566
EC number : -
Position : 6386421 - 6387047 bp
Length : 627 bp
Strand : -
Note : KEGG: vap:Vapar_5156 two component transcriptional regulator LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR

DNA sequence : 
ATGCAACCGCTGATCGATGGACTCATCTATATCGTCGACGACGATGCCAGCGTGCGCGAGGCGCTGGCCTGGCTGCTGCG
CTCGCGGCGTCTGGCGAGCGAGCATTTCGGCAGCGCCGAGGCCTTCGAGCAGTTGCTGGCCGAGGGCCCGCTGCCTGATC
AGCCGCGCTGCCTGCTGCTCGATGTGCGCATGCCCGGCACCAGCGGGCTCGTGCTGTTCGACCGGCTCGCCGAGCGCGGC
CTGCTGGACGCGATGCCGGTGATCTTTCTCACCGGCCACGCGGACGTGCCGACGGCGGTGGATGCCGTCAAGCGCGGTGC
CTTCGATTTCTGCGAGAAGCCGTTCTCGGACAACGCGCTGGTCGATCGCATCGAGCAGGCGCTCGGGGCGTCGCTGCGCG
CGCTCGAGGTGCAGCGCGTGCGCCACAGCCTCGCCGGGCGCATCGCCGAACTGACGGACCGCGAGCGCGACGTGATGCGG
CTCGTGGTCGAAGGATTGCCGAACAAGCTGATCGCCGATCAGTTGGCCATCAGCGTGCGCACGGTGGAGGTCCACCGGGC
GCGCGTGTTCGAGAAGATGGAAGTGAAGTCGGCCGTCGAATTGGCGAACCGACTTCGGGATCTTTAG

Protein sequence : 
MQPLIDGLIYIVDDDASVREALAWLLRSRRLASEHFGSAEAFEQLLAEGPLPDQPRCLLLDVRMPGTSGLVLFDRLAERG
LLDAMPVIFLTGHADVPTAVDAVKRGAFDFCEKPFSDNALVDRIEQALGASLRALEVQRVRHSLAGRIAELTDRERDVMR
LVVEGLPNKLIADQLAISVRTVEVHRARVFEKMEVKSAVELANRLRDL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ttrR YP_216395.1 tetrathionate reductase complex: response regulator Virulence SPI-2 Protein 1e-19 44
ttrR NP_456141.1 putative two-component response regulator Not tested SPI-2 Protein 1e-19 44
ttrR NP_805058.1 two-component response regulator Virulence SPI-2 Protein 1e-19 44
ttrR CAB37412.1 TtrR Virulence SPI-2 Protein 9e-20 44
ttrR NP_460352.2 response regulator Virulence SPI-2 Protein 2e-19 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Varpa_5872 YP_004158135.1 two component LuxR family transcriptional regulator VFG0488 Protein 5e-20 44