|
Name : Varpa_5789 (Varpa_5789) Accession : YP_004158052.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Unknown Product : s-adenosylmethionine/tRNA-ribosyltransferase- isomerase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0809 EC number : - Position : 6296633 - 6297676 bp Length : 1044 bp Strand : + Note : KEGG: vap:Vapar_5069 S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein DNA sequence : ATGCGCGCCTTCACGCTTTCCGATTTCGATTTCGACCTGCCGCCCGAACTGGTGGCGCAACATCCGGCCTCCGAACGCAC GTCTTCCCGTCTCCTCGACGGCACAGGCGACGCCCCGGTCGACCGCATTTTCAAGGACCTGCCCTCGCTGCTGCGCGAAG GCGACCTGCTGGTCTTCAACGACACGCGCGTGGTCAAGGCGCGCCTGTTCGGCGAAAAGCCGACCGGGGGCAAGCTCGAG CTGCTGGTCGAGCGCGTGCTGCAGGGCCAGGAGGTGGTCGCGCACATGAAGGTCAGCAAGAAGCCGCCGGTGGGCACGAC GCTGGAAATGGTCGGCGGCTTTCGCGCCACGCTGCTGGGCCGCTGGCCCGAGGAAGACGGCGCGCTGTTCCGCTTCGCCT TCGAGAGCGACGCGGGCGAGAACCCCTACATGCTGATGGAGCGCTGCGGCCACGTGCCGCTGCCGCCCTACATCACGCAC ACCGATTCGGTCGACGACGAGAGCCGCTACCAGACCGTGTTCGCGCGCGTGCCCGGCGCCGTGGCCGCACCGACTGCCGC GCTGCATTTCGACGAAGGCCTGCTGGCTGCGCTGGAAGCGCGCGGTGTGCAGCGCGCGAACGTCACGCTGCACGTTGGCG CCGGCACCTTCCAGCCGGTGAAGACCGAGAACATCGCCGAGCACACGATGCATGCCGAGCGCTACGAGGTGCCCGAGGCC ACGCGGCGCGCGATTGCCGAATGCAAGGCGCGCGGCGGCCGTGTGATCGCGGTCGGCACGACCACCGTGCGCACGCTCGA ATCGTGGGCCAAGAGCGGCGAGGCCACGGGCGACACGCGCATCTTCATCACGCCGGGCTTCGCCTTCGCGCACGTCGATG TGCTGGTGACCAACTTCCATTTGCCCAAGAGCACGCTGATGATGCTGGTCTCGGCCTTTGCGGGCTACGAGCGGGTGATG GCGCTGTACGCCAACGCCATCGCCCATCAATACCGCTTCTTCAGCTACGGCGACGCCATGTTGCTTGCACGGACCCAGGA CTGA Protein sequence : MRAFTLSDFDFDLPPELVAQHPASERTSSRLLDGTGDAPVDRIFKDLPSLLREGDLLVFNDTRVVKARLFGEKPTGGKLE LLVERVLQGQEVVAHMKVSKKPPVGTTLEMVGGFRATLLGRWPEEDGALFRFAFESDAGENPYMLMERCGHVPLPPYITH TDSVDDESRYQTVFARVPGAVAAPTAALHFDEGLLAALEARGVQRANVTLHVGAGTFQPVKTENIAEHTMHAERYEVPEA TRRAIAECKARGGRVIAVGTTTVRTLESWAKSGEATGDTRIFITPGFAFAHVDVLVTNFHLPKSTLMMLVSAFAGYERVM ALYANAIAHQYRFFSYGDAMLLARTQD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| queA | AAF71483.1 | QueA | Not tested | Hrp PAI | Protein | 1e-87 | 57 |
| queA | AAT96182.1 | QueA | Not tested | T-PAI | Protein | 4e-82 | 57 |
| queA | AAT96042.1 | QueA | Not tested | T-PAI | Protein | 2e-83 | 57 |
| queA | AAT96106.1 | QueA | Not tested | T-PAI | Protein | 2e-83 | 57 |
| queA | AAT96070.1 | QueA | Not tested | T-PAI | Protein | 2e-83 | 57 |
| queA | AAF71490.1 | QueA | Not tested | Hrp PAI | Protein | 1e-83 | 57 |
| queA | AAT96122.1 | QueA | Not tested | T-PAI | Protein | 1e-86 | 57 |
