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Name : Varpa_5694 (Varpa_5694) Accession : YP_004157958.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Unknown Product : k+-transporting ATPase subunit B Function : - COG functional category : P : Inorganic ion transport and metabolism COG ID : COG2216 EC number : - Position : 6184427 - 6186535 bp Length : 2109 bp Strand : - Note : KEGG: vap:Vapar_4994 K+-transporting ATPase, B subunit; TIGRFAM: K+-transporting ATPase, B subunit; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase DNA sequence : ATGACTGCCAACACCAAAACCTCTCTCTCGCTGCTCGACGCAGCGCTGGTCAAGCCCGCCCTCTGGGGCGCCTTCGCCAA GCTGGACCCGCGCACCCAGTGGCGCAACCCTGTGATGTTCATCGTCTATATCGGGAGCATCCTCACCAGCCTGCTCTGGG TGCATGCGCTGAGCTTTCCCGGCGACACCGGCATGAAGCCCGGCTTCGTGCTCGCCATCACCGTGTGGCTGTGGTTCACC GTGCTGTTCGCGAACTTTGCCGAGGCCCTGGCCGAAGGCCGCAGCAAGGCTCAGGCCGCTTCATTGCGCGGCTTGCGCAA GGACACCTGGGCCAAGAAGTTGACGGAGCCGCAACAGCAGCACCATGGCGGCCAGTGGCTGCCGGAGCAGGCGCCCAACC TGCGCAAGGGCGACGTCGTGCTGGTCGAGACCGGCGACGTGATTCCGCTCGACGGCGAAGTCATCGAAGGCGTGGCCTCG GTCGACGAAAGCGCCATCACCGGCGAATCGGCGCCCGTGGTGCGCGAATCGGGTGGCGACTTCTCTGCAGTGACCGGCGG CACCCGCGTGCTGTCGGACTGGCTGGTGGTGCGCATCTCGGTGAACCCGGGCGAGTCGTTCCTGGACCGCATGATCGGCA TGGTCGAAGCGGCCAAGCGCCAGAAGACGCCCAACGAGATCGCGCTCACCATCCTGCTGGTGGCGCTCACGCTCGTGTTC CTGATGGTCACCGTCACGCTGCTGCCGTTCTCGGTGTTCAGCGTGGAGGCCGCGGGTGCGGGCACCGTGGTGTCGCTCAC CGCGCTGGTCGCGCTGCTGGTGTGCCTGATCCCGACCACCATCGGCGGCCTGCTCTCGGCCGTCGGCGTGGCCGGCATGA GCCGCATGATGCAGGCCAACGTGATCGCGACCTCGGGCCGCGCGGTCGAAGCGGCCGGCGACGTCGACGTGCTGCTGCTC GACAAGACCGGCACCATCACGCACGGCAACCGCCAGGCCAGCGCCTTCCTGCCAGCGCCCGGCGTGACCAAGGCGCGCTT GGCGCGTGCCGCGATGGTTGCATCGCTGGCCGACGAAACGCCCGAAGGCCGCAGCATCGTCGACCTGGCGCGCCGCGACG GCCTCGAAGCCACGGCCGTGGAGGGCGCACGCTTCGTGCAGTTCACCGCGCAGACGCGCATGAGCGGAGCCGACCTGCCC GCCGCCCCCAACAGCCTCGATACCGATGTCGTCCTGTTGCGCAAAGGCGCTGTCGAAGCGGTGCGCCGCCACGTCGAAGC GTTGGGCGGCAGCATGCCCGCCGAGATGCTGCGCGCGGCCGAAGAGACGGCGCGCCGCGGCAGCACGCCGCTGGCCGTGT CGGAAGGCAATCGCGTGCTCGGCGTGGTCGAGCTCAAGGACATCGTCAAGACCGGCATCAAGGAGCGCTTCGCCGAACTG CGCCGCATGGGCATCAAGACGGTGATGATCACCGGCGACAACAAGCTCACCGCCGCGGCCATCGCCGCCGAGGCCGGCGT GGACGACTTCCTCGCCGAAGCCACGCCCGAGGACAAGCTCGCGCTCATCCGCAAGTACCAGTCCGAAGGCCGCCTGGTCG CGATGACCGGCGACGGCACCAACGACGCGCCCGCGCTCGCGCAGGCCGACGTGGCGGTGGCGATGGGCAGCGGCACGCAG GCCGCGAAAGAGGCCGGCAACATGGTCGACCTCGACTCCAACCCGACCAAGCTGCTCGAAGTGGTGGAGACCGGCAAGGC GCTGCTCATGACGCGCGGCTCGCTCACCACCTTCTCGATCGCAAACGACGTGGCGAAGTACTTCGCGATCATTCCCGCGA TCTTCGTCTCGACCTATCCGCAACTGGGCGCGCTCAATGTGATGCGCCTCGCGAGCCCGTCGTCGGCGATTCTTTCGGCG GTGATCTTCAACGCGCTCGTCATCGTGTTCCTGATTCCGCTCGCGCTCAAGGGCGTGCGCTACCGGCCGGTGGGCGCTGC CGCACTGCTGCGCCGCAACCTGGCCATCTACGGCCTGGGCGGCCTCGTCGTCCCCTTCATCGGCATCAAGTTGATCGACT GGCTGCTCGTCGCAGTCCACCTGGTCTGA Protein sequence : MTANTKTSLSLLDAALVKPALWGAFAKLDPRTQWRNPVMFIVYIGSILTSLLWVHALSFPGDTGMKPGFVLAITVWLWFT VLFANFAEALAEGRSKAQAASLRGLRKDTWAKKLTEPQQQHHGGQWLPEQAPNLRKGDVVLVETGDVIPLDGEVIEGVAS VDESAITGESAPVVRESGGDFSAVTGGTRVLSDWLVVRISVNPGESFLDRMIGMVEAAKRQKTPNEIALTILLVALTLVF LMVTVTLLPFSVFSVEAAGAGTVVSLTALVALLVCLIPTTIGGLLSAVGVAGMSRMMQANVIATSGRAVEAAGDVDVLLL DKTGTITHGNRQASAFLPAPGVTKARLARAAMVASLADETPEGRSIVDLARRDGLEATAVEGARFVQFTAQTRMSGADLP AAPNSLDTDVVLLRKGAVEAVRRHVEALGGSMPAEMLRAAEETARRGSTPLAVSEGNRVLGVVELKDIVKTGIKERFAEL RRMGIKTVMITGDNKLTAAAIAAEAGVDDFLAEATPEDKLALIRKYQSEGRLVAMTGDGTNDAPALAQADVAVAMGSGTQ AAKEAGNMVDLDSNPTKLLEVVETGKALLMTRGSLTTFSIANDVAKYFAIIPAIFVSTYPQLGALNVMRLASPSSAILSA VIFNALVIVFLIPLALKGVRYRPVGAAALLRRNLAIYGLGGLVVPFIGIKLIDWLLVAVHLV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kdpB | NP_814334.1 | potassium-transporting ATPase subunit B | Not tested | Not named | Protein | 2e-165 | 60 |
| ef0088 | AAM75291.1 | EF0088 | Not tested | Not named | Protein | 1e-165 | 60 |
| kdpB | NP_373310.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 1e-140 | 53 |
| kdpB | YP_190029.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 1e-140 | 53 |
| kdpB | YP_251949.1 | potassium-transporting ATPase subunit B | Not tested | SCCmec | Protein | 5e-142 | 53 |
| kdpB | BAA82181.1 | potassium-transporting ATPase(B chanin) | Not tested | Type-II SCCmec | Protein | 1e-140 | 53 |
| SAR0071 | YP_039539.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 1e-140 | 53 |
| kdpB(SCCmec) | NP_370597.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 1e-140 | 53 |
