Gene Information

Name : Varpa_5677 (Varpa_5677)
Accession : YP_004157941.1
Strain : Variovorax paradoxus EPS
Genome accession: NC_014931
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 6167583 - 6168239 bp
Length : 657 bp
Strand : -
Note : KEGG: vap:Vapar_4983 two component transcriptional regulator winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver

DNA sequence : 
ATGCGCGTGCTTTTGGTGGAAGACGATGAAATGATCGGGCGCAGCCTGAAACAGGCGCTCGAGGGCGCGGGCTGGTCCGC
CGACTGGGTGCGCGACGGCGAGCTCGCGCAGAGCGCGTTGGGCGACGGCGGCTACACCTGCGTGCTGCTCGACCTGGGCC
TGCCCAAGCAGGACGGCACCGACGTGCTGCGGCGCGCGCGCGAACGCGGCGATGCAACGCCGGTGCTGGTGCTCACGGCC
CGCGACGGCCTCGACGACCGCATCAACAGCCTGGACCTCGGGGCGGACGACTACCTGCTCAAGCCCTTCGAGTTCCGCGA
ACTGCTCGCGCGCATGCGGGCCATCGTGCGCCGCCGTGATGGCGCGGCGCATTCGCTGGTGGGCAGCGGTGTCCTGCAGC
TGGACCTGACGACGCGCGAGGTGCTGGTGAATGGCGCGCGCGAGGCGCTGACAGCGCGCGAATTCGCGCTCCTGCATGCG
CTGCTGGAGCGGCCGGGTGCCATCCTTTCCCGCGAGCAACTCGAAAACCGCATCTACGGCTGGGGCGAAGAAGTGACCAG
CAACGCCATCGACGTGCTGATCCACGGCATGCGCCGCAAGCTCGGTGCCGAGTCGATTCGCAATGTGCGCGGACTGGGCT
GGCGCGTGGCTGCATGA

Protein sequence : 
MRVLLVEDDEMIGRSLKQALEGAGWSADWVRDGELAQSALGDGGYTCVLLDLGLPKQDGTDVLRRARERGDATPVLVLTA
RDGLDDRINSLDLGADDYLLKPFEFRELLARMRAIVRRRDGAAHSLVGSGVLQLDLTTREVLVNGAREALTAREFALLHA
LLERPGAILSREQLENRIYGWGEEVTSNAIDVLIHGMRRKLGAESIRNVRGLGWRVAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 3e-35 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Varpa_5677 YP_004157941.1 winged helix family two component transcriptional regulator BAC0487 Protein 4e-37 43
Varpa_5677 YP_004157941.1 winged helix family two component transcriptional regulator BAC0197 Protein 6e-33 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Varpa_5677 YP_004157941.1 winged helix family two component transcriptional regulator VFG0473 Protein 4e-39 43
Varpa_5677 YP_004157941.1 winged helix family two component transcriptional regulator VFG1390 Protein 3e-27 41
Varpa_5677 YP_004157941.1 winged helix family two component transcriptional regulator VFG1389 Protein 1e-24 41