Gene Information

Name : Varpa_5568 (Varpa_5568)
Accession : YP_004157833.1
Strain : Variovorax paradoxus EPS
Genome accession: NC_014931
Putative virulence/resistance : Unknown
Product : alcohol dehydrogenase zinc-binding domain-containing protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG2130
EC number : -
Position : 6063903 - 6064946 bp
Length : 1044 bp
Strand : -
Note : PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: vap:Vapar_4889 alcohol dehydrogenase zinc-binding domain protein

DNA sequence : 
ATGAGCAGCTCACTCACCAACCACCAGGTCCGCCTCGCCAAACGCCCCGAAGGCACGGCCACCCGCGAGAACTGGAAGTT
CACCACCGAGCCGGTCGGCGAGCCGGCCGAAGGCGGGGTGCTGGTCAAGACGCTGTCGCTGTCGCTCGACCCTGCGATGC
GCGGCTGGCTCAACGACGCCAAGAGCTACATCGCGCCCGTGGCCATCGACGAGGTGATGCGCGCCGGCGGCGTCGGCCGG
GTCATCGCCTCGAAGAACCCGCAGTTCACGGTGGGCGACACCGTGTACGGCACGCTGGGCGTGCAGGAATACATCCTGAT
CCCCGAAGACCAGATCAAGCGCAACGGGCTGGTCAAGCTCGACCTGAGCGTGGGCACGATCACGCAATGGCTCAACGTGC
TGGGCATGCCGGGCATGACCGGCTACTTCGGCCTGATGGACGTGGGCCAGCCCAAAGCGGGCGAAACAGTCGTCATCTCC
GGCGCGGCCGGAGCGGTCGGGCAGACGGTGGGGCAGCTCGCCAAGATCAAGGGCTGCCGCGTGGTCGGCATCGCCGGCGG
TGCCGCCAAGTGCGACTGGGTGGTCAAGGAGCTGGGCTTCGATGCCTGCATCGACTACAAGGCCGGGCCCGGCGCGGTGC
GCGAAGGCCTCAAGACACATTGCCCGAAGGGCGTGGACATCTACTTCGACAACGTCGGCGGGGAAATTCTCGATGCGGTG
CTGGCTCGGCTCGCGCGCAAGGCCCGCGTGATCATCTGCGGCGCGATCAGCCAATACAACAACGCCAACAGCATGCCGGG
CGCAGGTCCGAAAAATTATCTGAGCCTCTTGGTGAACCGGGCGCGGATGGAGGGCATCGTGGTGTTCGACTATGCCGATC
GGTACCACATTGCTATCGCAGAGCTCGCCGGATACCTGAAAGATGGACGCATGAAGAGCAAGGAAGACGTCGTTTCGGGG
ATCGACACTTTCCCTGAAGCGCTCAACCGGCTGTTCAGTGGCGAGAATTTCGGAAAGCTGGTCTTGCAGGTCGCCGCTGA
ATAG

Protein sequence : 
MSSSLTNHQVRLAKRPEGTATRENWKFTTEPVGEPAEGGVLVKTLSLSLDPAMRGWLNDAKSYIAPVAIDEVMRAGGVGR
VIASKNPQFTVGDTVYGTLGVQEYILIPEDQIKRNGLVKLDLSVGTITQWLNVLGMPGMTGYFGLMDVGQPKAGETVVIS
GAAGAVGQTVGQLAKIKGCRVVGIAGGAAKCDWVVKELGFDACIDYKAGPGAVREGLKTHCPKGVDIYFDNVGGEILDAV
LARLARKARVIICGAISQYNNANSMPGAGPKNYLSLLVNRARMEGIVVFDYADRYHIAIAELAGYLKDGRMKSKEDVVSG
IDTFPEALNRLFSGENFGKLVLQVAAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SH0097 YP_252012.1 hypothetical protein Not tested SCCmec Protein 2e-51 44