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Name : Varpa_5556 (Varpa_5556) Accession : YP_004157821.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Virulence Product : two component sigma-54 specific Fis family transcriptional regulator Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG2204 EC number : - Position : 6051030 - 6052385 bp Length : 1356 bp Strand : + Note : KEGG: aav:Aave_0172 two component, sigma54 specific, fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase DNA sequence : ATGGCGCACCTGCTGATCGTCGATGACGACGATGCCTTTCGCGACACGCTGGCCGAGACGCTGCAGGGCCTCGGCCACGA CGTGATCGCCGCGGCCGGCGGCGCCGAGGCGATGGAGACGCTGGCGCGCGGACGCTTCGACGCCGTGTTCCTCGACCACC GCATGCCCGGCATGGACGGCCTGCAGACGCTCGCCGCCATGCAGGCGCGGCTGGTGCACCTGCCGCCGGTGATCGTGCTC ACCGCGTTCGCGAGCGCGGGCAACACCATCGAGGCGATGCGCCTGGGCGCCTTCGACCATCTGGCCAAGCCGATCAGCCG CGAGGCGGTGCGCGAAGTGCTGGAACGCGCGCTGCAGCAGCGGACGACCGCAACGCCGTCGAGCGCCCCGGCGGAAGAAG ACGACAGTGGCGGCGACTTGATCGGCCCTGGCCACGCGATGCGCGAAGTGCACAAGCGCATCGGCCTGGCCGCGGCGAAT TCGATGCCGGTGCTGGTGCTCGGCGAAACGGGCACCGGCAAGGAAATGGTAGCGCGCGCGCTGCACCGCCATTCGGCACG CGCCGACCGGCCCTTCGTGGCTATCAACTGCTCGGCCATTCCGAAGGAGCTGCTCGAAAGCGAACTCTTCGGCCATGTGC GCGGCGCGTTCACGGGTGCCACGGGCGAGCGCCCGGGATGCTTTCGCGCGGCCGACGGCGGCGTGCTGCTGCTCGACGAG ATCGGCGACATGGCGCTGGACATGCAGGCCAAGATCCTGCGCGCACTGCAGGAGGGCGAGGTCACGCCGCTGGGCAGCCA CAGAACGATCAAGGTCGACGTGCGCGTGATCGCCGCGACGCACCGCGACTTGGCCGCCGCAGTGCGCGAGGGGCGCTTTC GGGAAGACCTGCTCTACCGGCTCGATGTGCTCTCGATCCGCCTGCCGCCGCTGCGCGAGCGGCTGGCCGACATCATTCCG CTGGCCGAGCACTTCCTGCGTCGCGCGGCAACGCCAGAGGCACCGAAGGCGCTGTCCGCCGACGCCGCGCAGCGGCTGCT GAGCCACCCCTGGCCCGGCAACGTGCGCGAGCTGCGCAATGTGATGGAGCGTTGTCAGGCGCTGGTGCGCCACCGCGTGA TCGGCGGCGCGGACTTGGCTGCAGCACTGGGCACAGCGCGCCCCGGCGAGACCGAGCAGACGCTCCCGGCCGGCTGGCTC GACGCCGAGCTGCCCGCCGCCGTGGAGCGGCTGGAGCGGCTGCTGATCGCGAACGCGCTCGCAGAGTCCGGGGGCAATCG CGCCGAGGCTGCACGCCGGCTGGGCATTCACCGGCAGTTGCTCTACCGCAAGCTCACCCAGCACGGCCTTGAGTAA Protein sequence : MAHLLIVDDDDAFRDTLAETLQGLGHDVIAAAGGAEAMETLARGRFDAVFLDHRMPGMDGLQTLAAMQARLVHLPPVIVL TAFASAGNTIEAMRLGAFDHLAKPISREAVREVLERALQQRTTATPSSAPAEEDDSGGDLIGPGHAMREVHKRIGLAAAN SMPVLVLGETGTGKEMVARALHRHSARADRPFVAINCSAIPKELLESELFGHVRGAFTGATGERPGCFRAADGGVLLLDE IGDMALDMQAKILRALQEGEVTPLGSHRTIKVDVRVIAATHRDLAAAVREGRFREDLLYRLDVLSIRLPPLRERLADIIP LAEHFLRRAATPEAPKALSADAAQRLLSHPWPGNVRELRNVMERCQALVRHRVIGGADLAAALGTARPGETEQTLPAGWL DAELPAAVERLERLLIANALAESGGNRAEAARRLGIHRQLLYRKLTQHGLE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00300 | YP_008207765.1 | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | Not tested | AbaR25 | Protein | 2e-62 | 41 |
| BJAB0868_00304 | YP_008211630.1 | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | Not tested | AbaR26 | Protein | 2e-62 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Varpa_5556 | YP_004157821.1 | two component sigma-54 specific Fis family transcriptional regulator | BAC0467 | Protein | 4e-74 | 43 |
| Varpa_5556 | YP_004157821.1 | two component sigma-54 specific Fis family transcriptional regulator | BAC0089 | Protein | 5e-68 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Varpa_5556 | YP_004157821.1 | two component sigma-54 specific Fis family transcriptional regulator | VFG1249 | Protein | 4e-72 | 46 |
| Varpa_5556 | YP_004157821.1 | two component sigma-54 specific Fis family transcriptional regulator | VFG1214 | Protein | 4e-72 | 43 |
| Varpa_5556 | YP_004157821.1 | two component sigma-54 specific Fis family transcriptional regulator | VFG0116 | Protein | 2e-63 | 41 |
