Gene Information

Name : Varpa_5534 (Varpa_5534)
Accession : YP_004157800.1
Strain : Variovorax paradoxus EPS
Genome accession: NC_014931
Putative virulence/resistance : Virulence
Product : type VI secretion protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3516
EC number : -
Position : 6024274 - 6024789 bp
Length : 516 bp
Strand : -
Note : KEGG: bgl:bglu_1g03890 hypothetical protein; TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: Uncharacterised conserved protein UCP028301

DNA sequence :

ATGGCGACCAAAAGACAGAGTGTGCAAAAGCGCCTGCAGAAAGTGCGCCCGCCGCGCGTGCAACTCACGTACGACGTGGA
ACTCGGTGACGCCATCGAGAAAAAGGAATTGCCATTCGTCGTTGGCGTGGTCGCCGACCTGGCTGGCCAGTCCGAGGTCG
AGCAGCCCAAGCTGAAGGACCGCAAGTTCGTCAATGTCGACCGCGACAACCTGGACGACGTCATGAAGGGCCTGGCCCCG
CGCGCGGCCTACCAGGTGGAGAACAAGCTCGACGAGCGCGGCGGCACCTTCGGCGTCGACCTCACCTTCAATTCGATGGA
CGCCTTCTCGCCCGAGGCCGTGGTCGACCAGATCGAGCCGCTCAAGCGCCTGCTCGACGCGCGCACCAAGCTGGCGGACC
TGCGCAACAAGATGGCCGGCAACAGCAAGCTCGAAGACCTGCTGGCCGACGTGCTGAACAACACCGAGCAACTCCAGCGC
CTGGGGCAGGGCGCCGGCAAGAAGGACGGAAGCTGA

Protein sequence :

MATKRQSVQKRLQKVRPPRVQLTYDVELGDAIEKKELPFVVGVVADLAGQSEVEQPKLKDRKFVNVDRDNLDDVMKGLAP
RAAYQVENKLDERGGTFGVDLTFNSMDAFSPEAVVDQIEPLKRLLDARTKLADLRNKMAGNSKLEDLLADVLNNTEQLQR
LGQGAGKKDGS

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
STY0297	NP_454879.1	conserved hypothetical protein	Not tested	SPI-6	Protein	9e-28	42

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Varpa_5534	YP_004157800.1	type VI secretion protein	VFG2069	Protein	5e-29	44