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Name : Varpa_5528 (Varpa_5528) Accession : YP_004157794.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Virulence Product : type VI secretion ATPase, clpv1 family Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 6015843 - 6018563 bp Length : 2721 bp Strand : - Note : TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: ATPase AAA-2 domain protein; Clp domain protein; AAA ATPase central domain protein; Clp ATPase-like; KEGG: xop:PXO_02051 type VI secretion ATPase, ClpV1 family; SMART: AAA ATPase DNA sequence : ATGAGCACATCGCTGAAAACACTGATCACCAAGCTCAACGCCAGCGCACGCATGGCCACGCAGCGCGCGGCCAATCTGTG CCTGGCCAACGGCCACTACGAAGTGGACCTGGAGCACCTGTTCCTGGCGCTGCTGGAGCAGACCGACAACGACCTCGCGC GCGTGCTGCGCGCCAACCGCATCAGCGCGACCGCGATCCAGTCGGACCTGGAGCGCGAGATCCAGACCTTCAAGAACGGC AACACGCGCACGCCGGTGTTCTCGCAGCACCTGCAGCAGTTGTTTCAGCAGGCGTGGCTCCTGGCCTCGCTCGATGCGCA CGTGGCGCAGATCCGCTCGGGCCACCTGCTGCTCGCGCTGTTGACCGAACCCGACCTCGCACAACTCGCGCAGCGCGGCT CGCCGCTGTTCGCGAAGATCCGCCTCGAAGACCTGAAGCACGACTTCGACAAGCTCACCGACGGTTCGAGCGAAGCGGCC GAAGCCGGCGCCTCGGGCGGTGCGGCCACGGAAGGCGACGCGCAGCAAGCGCCGGCCGATGCGCTGGCCGCGGGCGTGCC CGGCAAGACGCCCGCGCTCGACCAGTTCACCACCAACCTCACGCAGCGCGCGAAAGACGGTGCGCTCGACCCGGTGATCG GCCGCGACACCGAGATCCGCCAGGTCATCGACATCCTGATGCGCCGGCGCCAGAACAACCCCATCCTCACCGGCGAGGCC GGGGTCGGCAAGACGGCGGTGGTCGAGGGGTTGGCGTTGCGCATCGCGACAGAGGACGTGCCCGAGTCGCTGCGCGCCGT GGCGCTGCACACGCTGGACATGGGCCTTCTGCAGGCCGGCGCGAGCGTGAAGGGCGAGTTCGAGAACCGCCTGAAGAACG TGATCGCCGAAGTGAAGAAGAGCCCGCATCCGATCGTGCTCTTCATCGACGAGGCCCACACGATGATCGGCGCGGGCGGC CAGGCCGGGCAGAGCGATGCGGCCAACCTGCTCAAGCCCGCGCTCGCGCGCGGCGAACTGCGCACCATCGCCGCCACGAC CTGGGGCGAATACAAGAAATACTTCGAGAAGGACGCGGCGCTCGCGCGGCGCTTCCAGGTCGTGAAGGTCGAGGAGCCCA GCGAAACGCTGGCTGCCGCCATGCTGCGCGGCATGGTGCCGCTGATGGAAAAGCACTTCAACATCCGCGTGCTCGACGAA GCCATCACCGAGGCGGTGCGCCTGTCGCACCGCTACATCAGCGGCCGCCAGCTGCCCGACAAGGCGGTGAGCGTGCTCGA CACCGCGTGCGCGAAAGTGGCGCTCGGCCAGAGCGCGACGCCGGCGCTGATCGAGGAAGCGAATCGCGGCCTCGAACGTA TCGAGGCCGAGAGTGCCGCGCTGGTGCGCGACACCGCGGCCGGCGGGCGCCATGAAGTGCGGCTGGCCGAACTGGCGGAA AAGAAGAGCGCGCTGCAGGCCGAGCTTGCTGCGAGCCAGCAGCGCCTTGCCGAAGAGAACGCGCTGGTCGAACGCATCCG TGCACTGCGCGCGCAACGCGACGAGTCGGCTGCACAGCCCGAGGCTGCACCCGCAGAGAAGGCCCCCGCACGTGCCGCGA GCCGCAAGAAATCCGCGACCAGTGCGGACCCCGAACGCGACCAACTCGATGCCCTGCTCGCCGAGCTGCGCGCGCTGCAA GGCACCACGCCGATGGTTCCACTGCAGGTCGACGGCCACGTCGTCGCCGAGATCGTCTCGGCCTGGACCGGCGTGCCGCT CGGCCGCATGGTCAAGGACGAAATCAAGACCGTGCGCGCCCTCGATACGCTGCTGGCCGAACGCGTGATCGGCCAGGACC ACGCGCTCGCCGCCGTCGCCCAGCGCGTGCGCACCGCCAGCGCGCGCCTGGAAGACCCCAACAAGCCGCGCGGCGTGTTC ATGTTCGTCGGCCCCTCGGGCGTGGGCAAGACCGAGACCGCGCTCGCGTTGGCCGACATCCTCTACGGCGGCGAGAAGAA GCTCATCACCATCAACATGAGCGAGTACCAGGAGGCGCACAGCGTCTCGGGCCTGAAGGGATCGCCGCCCGGCTACGTGG GTTATGGCGAAGGCGGCGTGCTCACCGAAGCCGTGCGCCGCCAGCCTTACAGCGTGGTGCTGCTCGACGAAGTCGAGAAG GCGCACCCCGATGTGCTGGAGATGTTCTTCCAGGTGTTCGACAAAGGGATGATGGACGACGCCGAGGGCCGCGAGATCGA CTTTCGCAACACGCTGATCATCCTCACCTCGAACATCGGCTCGTCGCAGATCATGCAGGCGTGCCTGAACAAGGCCGACG ACGAGCGCCCCGCGCCCGACGCGCTGGCCGATGCGCTGCGCCCCGTGCTCATGAAGGCCTTCAAGCCGGCCTTTCTCGGC CGCATGAAAGTGGCGCCGTTCTATCCGATCACCGATGCGGTGCTCGAACAGATCATCGCGCTCAAGCTGGGCCGCATCCG CGACCGCATCGCGACCAACCACAAGGCAGTGTTCGAGTGGGACGACGCGCTGGTGGAGGCCGTGCTTGCGCGCTGCACCG AGGTCGATTCGGGCGCGCGCAACGTCGATCACATCCTGAACGGCACGCTCCTGCCCGAGATCGCGGAAGCGGTGCTCACG CGCATGGCGGACGAGACGCCGCTCGCGAAGATCAAGGCGAGCTGCGCCAAGAGCGGCGAGTTCCGCTACAGGATCAGCTA G Protein sequence : MSTSLKTLITKLNASARMATQRAANLCLANGHYEVDLEHLFLALLEQTDNDLARVLRANRISATAIQSDLEREIQTFKNG NTRTPVFSQHLQQLFQQAWLLASLDAHVAQIRSGHLLLALLTEPDLAQLAQRGSPLFAKIRLEDLKHDFDKLTDGSSEAA EAGASGGAATEGDAQQAPADALAAGVPGKTPALDQFTTNLTQRAKDGALDPVIGRDTEIRQVIDILMRRRQNNPILTGEA GVGKTAVVEGLALRIATEDVPESLRAVALHTLDMGLLQAGASVKGEFENRLKNVIAEVKKSPHPIVLFIDEAHTMIGAGG QAGQSDAANLLKPALARGELRTIAATTWGEYKKYFEKDAALARRFQVVKVEEPSETLAAAMLRGMVPLMEKHFNIRVLDE AITEAVRLSHRYISGRQLPDKAVSVLDTACAKVALGQSATPALIEEANRGLERIEAESAALVRDTAAGGRHEVRLAELAE KKSALQAELAASQQRLAEENALVERIRALRAQRDESAAQPEAAPAEKAPARAASRKKSATSADPERDQLDALLAELRALQ GTTPMVPLQVDGHVVAEIVSAWTGVPLGRMVKDEIKTVRALDTLLAERVIGQDHALAAVAQRVRTASARLEDPNKPRGVF MFVGPSGVGKTETALALADILYGGEKKLITINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRQPYSVVLLDEVEK AHPDVLEMFFQVFDKGMMDDAEGREIDFRNTLIILTSNIGSSQIMQACLNKADDERPAPDALADALRPVLMKAFKPAFLG RMKVAPFYPITDAVLEQIIALKLGRIRDRIATNHKAVFEWDDALVEAVLARCTEVDSGARNVDHILNGTLLPEIAEAVLT RMADETPLAKIKASCAKSGEFRYRIS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 3e-121 | 46 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 2e-121 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Varpa_5528 | YP_004157794.1 | type VI secretion ATPase, clpv1 family | VFG2084 | Protein | 3e-129 | 48 |
