|
Name : Varpa_5365 (Varpa_5365) Accession : YP_004157632.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Unknown Product : thiamine biosynthesis protein thic Function : - COG functional category : H : Coenzyme transport and metabolism COG ID : COG0422 EC number : - Position : 5826254 - 5828140 bp Length : 1887 bp Strand : - Note : KEGG: vap:Vapar_4728 thiamine biosynthesis protein ThiC; TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC DNA sequence : ATGAATGCCCCCGACAAGTTCACCTCTTTGCTCTCGCTCACGCGCGAGCCTTTTCCCGCGTCCCACAAGTGCCTGATCCC CGGCAGCCGGCCCGACCTGAACGTGCCGGTGCGCGATGTGCTGCTGACCAACGGCGAGACCGTCTCGCTTTATGACACCT CGGGCCCGTACACCGATGCCAAGGTCGACATTGACGTGCGCCGCGGCCTGCCGAGCGTGCGCGATGCGTGGATCGCCGAG CGCAACGACACCGAAAGCTATGAGGGCCGCTCGCACCAGGCGCTTGACGAAGGCCTGAAGCACGCGCAGGACCACGATGC CCAGCGCCTGGCCGAACTGCGCGCCGGCGCCTCGGCGCTGCAGCGCACGCCGCGCCGCGCGAAATCGGGCGCCAATGTCA CGCAGATGCACTACGCACGCCGCGGCATCGTCACGCCCGAGATGGAATACGTGGCCCTGCGCGAGAACGGCAAGCGCGAA TGGATGGCCGAATACCTCGCCAACGAAGAGCGCGCCAAGCGCGTGGCCGGCAACCCGATGGGCGCCAGCATTCCCCGCAT CATCACGCCCGAATTCGTGCGCGACGAGGTGGCCCGCGGCCGCGCGATCATCCCGGCCAACATCAACCATCCTGAAGTCG AGCCGATGGCCATCGGCCGCAACTTCAAGGTGAAGATCAACGCGAACATCGGCAATTCGGCCGTCACCTCCAGCATCGAG GAAGAGGTCGAAAAACTCGTGTGGGCGATCCGCTGGGGCGCCGACAACGTGATGGACCTGTCGACCGGCAAGAACATCCA CACCACGCGCGACTGGATCGTGCGCAACTCGCCGGTGCCCATCGGCACGGTGCCGATTTATCAGGCGCTGGAGAAGGTGG GCGGCGTGGCCGAGGACCTCACCTGGGAGATCTTCCGCGACACGCTGATCGAGCAGGCCGAGCAGGGCATCGACTACTTC ACCATCCACGCGGGCGTGCGGCTGCCGTTCATTCACCTCACGGCCGACCGCATGACGGGCATCGTCTCGCGCGGCGGCTC GATCATGGCCAAGTGGTGCATCGCGCACCACAAGGAGAGCTTCCTCTACGAGCGCTTCGAGGACATCTGCGACATCATGA AGGCATACGACGTGAGCTTCTCGCTGGGCGATGGCCTGCGTCCGGGCTCGGGCGCCGATGCGAACGACGAAGCGCAGTTC GCCGAACTGCGCACGCTGGGCGAGCTCACGCAGATCGCGTGGAAGCACGACGTGCAGACCATGATCGAAGGGCCGGGGCA TGTGCCGATGCACATGATCCAGGCCAACATGGACGAGCAACTCAAGCACTGCCACGAGGCGCCGTTCTACACGCTCGGGC CGCTGACGATCGACATCGCACCGGGCTATGACCACATCTCCAGCGCCATCGGGGCCGCGATGATCGGCTGGGCTGGCACT GCGATGCTGTGCTACGTGACGCCCAAGGAACACCTGGGGTTGCCGGATCGCGACGACGTGAAGCAGGGGATCATTGCGTA CAAGATCGCTGCGCATGCAGCGGACGTTGCGAAGGGGCATCCGGGTGCGCGGTCGCGGGACGATGCGTTGAGCAAGGCGC GCTTCGAGTTTCGCTGGCAGGACCAGTTCAACCTCGGCCTGGATCCCGACACGGCGCGCGAATTCCATGACGAGACGCTG CCGAAGGACTCGAGCAAGGTGGCGCACTTCTGCTCGATGTGCGGGCCGAAGTTCTGCTCGATGAAGATCACGCAGGAAGT GCGGGAGTACGCGGCGAAGAAGGGCGTAGCCGAAGCCGAGGCGATGGCTGAAGGCATGGAGGAGAAGTCGAAGGAGTTCA TGGCTGGGGGTGGGGAGATCTACATTCCCATTCGGGCTGTGTCTTAA Protein sequence : MNAPDKFTSLLSLTREPFPASHKCLIPGSRPDLNVPVRDVLLTNGETVSLYDTSGPYTDAKVDIDVRRGLPSVRDAWIAE RNDTESYEGRSHQALDEGLKHAQDHDAQRLAELRAGASALQRTPRRAKSGANVTQMHYARRGIVTPEMEYVALRENGKRE WMAEYLANEERAKRVAGNPMGASIPRIITPEFVRDEVARGRAIIPANINHPEVEPMAIGRNFKVKINANIGNSAVTSSIE EEVEKLVWAIRWGADNVMDLSTGKNIHTTRDWIVRNSPVPIGTVPIYQALEKVGGVAEDLTWEIFRDTLIEQAEQGIDYF TIHAGVRLPFIHLTADRMTGIVSRGGSIMAKWCIAHHKESFLYERFEDICDIMKAYDVSFSLGDGLRPGSGADANDEAQF AELRTLGELTQIAWKHDVQTMIEGPGHVPMHMIQANMDEQLKHCHEAPFYTLGPLTIDIAPGYDHISSAIGAAMIGWAGT AMLCYVTPKEHLGLPDRDDVKQGIIAYKIAAHAADVAKGHPGARSRDDALSKARFEFRWQDQFNLGLDPDTAREFHDETL PKDSSKVAHFCSMCGPKFCSMKITQEVREYAAKKGVAEAEAMAEGMEEKSKEFMAGGGEIYIPIRAVS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00317 | YP_008207782.1 | Thiamine biosynthesis protein ThiC | Not tested | AbaR25 | Protein | 0.0 | 69 |
| BJAB0868_00321 | YP_008211647.1 | Thiamine biosynthesis protein ThiC | Not tested | AbaR26 | Protein | 0.0 | 69 |
| thiC | YP_001598318.1 | thiamine biosynthesis protein ThiC | Not tested | MDA | Protein | 0.0 | 66 |
