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Name : Varpa_5128 (Varpa_5128) Accession : YP_004157398.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Unknown Product : integrase catalytic subunit Function : - COG functional category : L : Replication, recombination and repair COG ID : COG2801 EC number : - Position : 5579734 - 5580666 bp Length : 933 bp Strand : - Note : PFAM: Integrase catalytic region; KEGG: ctt:CtCNB1_4037 transposase DNA sequence : ATGGATTGCGCGCTCGCCCTTGCTGGACGGGGACGGCCAGTGAAGGCCGTCTGCCAGGCCCTTGGGTTGGCGCGCTCGAA CATTCATCGCTTGCAAGCTCGCTCCGAGTCCTGGATCGACGCCCGGACACGACGCACGGCGCCTGCAAGCGACGTGGCCT TGCTCGACGAGATCAAGGCCCAGATCACCGAGTTGCCGACCTATGGCTACCGGCGTGCCTGCGCGTTGGTGAACCGGCAT CGAGCCACCACCGGTGCGACGCGAGTGAACGCCAAGCGCATCTACCGCGTGATGGCGGCTCATGCATTGCTGCTACCGAA GGCGCCGAGACGGCGCCAGTCCAGCCGGCCCCATGAGGGCAAGGTGGCCGTCGCGCACAGCGACATGCGCTGGTGCTCGG ACGGCTTCGAGATCAAGTGTGATTCGGGGCAGACCGTGACCGCGACCTTCACCAAGGACTGCTGCGACCGTGAGATCCTG GCCTATCGGGCATGGGAGGGCAAAGGGCTGCCGGGCGAGCCGGTGCGCGAAATGCTCATCGAGGCCGTGGAGAAGCGCTT CGGCGGCGTCGAGGGTGTTCCCAGTACCCACGTCTTGGAGTTCCTCTCGGACAACGGGGGCGCCTACATCGCTGCCGAGA CCCGGCAGATCGCTCGACAACTGGGCCTGAGCCCAGTCAACACGCCCGTGTGCAGCCCCCAGAGCAACGGCATCGCCGAG AGCTTCGTGAACACGTTCAAGCGCGACTACGTCAGCCGCATGGACCTTGCCGATGCGAGAACGGTGATGGCGCAGATGGC CGCAGCCTTCGAGCACTTCAATGAGGTGCATCCGCACTCGGCATTGAAGATGAAATCACCCAGGGAGTTCAGGCAGCATC GCGCTGCCAACCAGCGTCTTGCTCAGATCGAGCAGACGCTACATTGCGAATAG Protein sequence : MDCALALAGRGRPVKAVCQALGLARSNIHRLQARSESWIDARTRRTAPASDVALLDEIKAQITELPTYGYRRACALVNRH RATTGATRVNAKRIYRVMAAHALLLPKAPRRRQSSRPHEGKVAVAHSDMRWCSDGFEIKCDSGQTVTATFTKDCCDREIL AYRAWEGKGLPGEPVREMLIEAVEKRFGGVEGVPSTHVLEFLSDNGGAYIAAETRQIARQLGLSPVNTPVCSPQSNGIAE SFVNTFKRDYVSRMDLADARTVMAQMAAAFEHFNEVHPHSALKMKSPREFRQHRAANQRLAQIEQTLHCE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tnpF | AAD44739.1 | TnpF | Not tested | SHI-2 | Protein | 2e-53 | 52 |
| unnamed | CAC39284.1 | hypothetical protein | Not tested | LPA | Protein | 1e-54 | 51 |
| SF2985 | NP_708759.1 | insertion element IS2 transposase InsD | Not tested | SHI-1 | Protein | 1e-52 | 51 |
| unnamed | AAL67379.1 | transposase-like protein | Not tested | PAI II CFT073 | Protein | 2e-53 | 51 |
| S4061 | NP_839230.2 | insertion element IS2 transposase InsD | Not tested | SHI-2 | Protein | 3e-60 | 50 |
| S3189 | NP_838472.2 | insertion element IS2 transposase InsD | Not tested | SHI-1 | Protein | 5e-59 | 50 |
| S4050 | NP_839218.2 | insertion element IS2 transposase InsD | Not tested | SHI-2 | Protein | 5e-60 | 50 |
| SF3708 | NP_709447.1 | IS2 transposase TnpB | Not tested | SHI-2 | Protein | 5e-60 | 50 |
| SF3721 | NP_709460.1 | IS2 transposase TnpB | Not tested | SHI-2 | Protein | 5e-60 | 50 |
| ECO111_3773 | YP_003236109.1 | putative IS2 transposase InsAB | Not tested | LEE | Protein | 2e-54 | 49 |
| aec49 | AAW51732.1 | Aec49 | Not tested | AGI-3 | Protein | 8e-62 | 49 |
| insD | YP_002414033.1 | insertion element IS2 transposase InsD | Not tested | Not named | Protein | 4e-60 | 49 |
| unnamed | CAC39283.1 | hypothetical protein | Not tested | LPA | Protein | 3e-55 | 43 |
| insD | YP_854263.1 | IS2 transposase | Not tested | PAI I APEC-O1 | Protein | 2e-38 | 42 |
| insD | AAZ04432.1 | IS2 transposase | Not tested | PAI I APEC-O1 | Protein | 1e-38 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Varpa_5128 | YP_004157398.1 | integrase catalytic subunit | VFG0649 | Protein | 4e-53 | 51 |
| Varpa_5128 | YP_004157398.1 | integrase catalytic subunit | VFG0621 | Protein | 2e-60 | 50 |
| Varpa_5128 | YP_004157398.1 | integrase catalytic subunit | VFG0608 | Protein | 2e-60 | 50 |
| Varpa_5128 | YP_004157398.1 | integrase catalytic subunit | VFG1732 | Protein | 2e-60 | 49 |
