Gene Information

Name : Varpa_4985 (Varpa_4985)
Accession : YP_004157256.1
Strain : Variovorax paradoxus EPS
Genome accession: NC_014931
Putative virulence/resistance : Virulence
Product : yop virulence translocation r
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 5428064 - 5428723 bp
Length : 660 bp
Strand : +
Note : KEGG: cti:RALTA_B1264 type III secretion system protein; TIGRFAM: Yop virulence translocation R; PFAM: type III secretion system inner membrane P protein

DNA sequence : 
ATGCAAGGAGCCATTCCCGAACCGATCACCATCGTCGCGCTGATCCTGGCCCTCGGGGTCACATCGTTCGCGGCACTGAT
GGTGACAAGCTACACCAAGCTCATCATCGTCTTCGGCCTGCTGCGCACGGCGCTCGGGCTGCAGCAGACGCCACCGAACA
TGGTGCTCAACGGCATCGCGATCATCCTGTCGGTCTACATCATGGCGCCCGTGGGCATGGAGGTGGGCGACGCTCTGCGC
AACCGCACGCTCGGCCAGAAGGGCGAGGGGTTGAACGACATCGTGGCGGTGATCGACGCGGCCAAGGTGCCGTTGAAGGA
GTTCCTGCAGAAGCACACGCGCGAGCGCGAGCGCCAGTTCTTCCTGAAGTCCGCATCGAGCATGTGGCCGCAGGCCCGCG
CCGCCCAATTGCAGCCCGACGACTTCATGGTGCTGGTGCCGAGCTTCACGCTCAGCGAGCTCACGCGCGCGTTCCAGATC
GGCTTCGTCATCTACCTGGTGTTCGTCGTCGTGGACCTGATCGTGGCGACCGTGCTGCTCGCGCTGGGCATGTCGATGAT
CGCGCCCACGACCATCTCGCTGCCCTTCAAGCTGCTGCTGTTCGTGATGCTGGACGGATGGACCCGGCTGGTTCACGGGC
TGGTGCTGTCGTACCGGTGA

Protein sequence : 
MQGAIPEPITIVALILALGVTSFAALMVTSYTKLIIVFGLLRTALGLQQTPPNMVLNGIAIILSVYIMAPVGMEVGDALR
NRTLGQKGEGLNDIVAVIDAAKVPLKEFLQKHTRERERQFFLKSASSMWPQARAAQLQPDDFMVLVPSFTLSELTRAFQI
GFVIYLVFVVVDLIVATVLLALGMSMIAPTTISLPFKLLLFVMLDGWTRLVHGLVLSYR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-57 56
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 8e-57 55
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 1e-58 54
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 1e-58 54
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-58 54
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 3e-58 54
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 3e-58 54
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-57 53
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-52 53
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 1e-37 45
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 1e-37 45
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 1e-37 45
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 6e-43 44
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-38 43
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 2e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Varpa_4985 YP_004157256.1 yop virulence translocation r VFG0188 Protein 2e-54 53
Varpa_4985 YP_004157256.1 yop virulence translocation r VFG0394 Protein 5e-51 48
Varpa_4985 YP_004157256.1 yop virulence translocation r VFG0044 Protein 3e-48 48
Varpa_4985 YP_004157256.1 yop virulence translocation r VFG1012 Protein 2e-34 44
Varpa_4985 YP_004157256.1 yop virulence translocation r VFG2494 Protein 1e-32 42
Varpa_4985 YP_004157256.1 yop virulence translocation r VFG2131 Protein 6e-41 42