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Name : Varpa_4983 (Varpa_4983) Accession : YP_004157254.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Virulence Product : type III secretion protein, hrcv family Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 5424555 - 5426627 bp Length : 2073 bp Strand : - Note : KEGG: cti:RALTA_B1262 SctV: non flagellar T3S system conserved transmembrane protein. FHIPEP (flagella/HR/invasion proteins export pore) family.; TIGRFAM: type III secretion protein, HrcV family; PFAM: type III secretion FHIPEP protein DNA sequence : ATGGCAAGGAATCCGCGACCCGATCGACAAGGCGGCAGCCGATGGCGCGAGCTCGCCAGCAACGCGGGCCGCTACAACGA CTTGCTGCTCGCCGGACTGCTCGTGGTGGTGGTGGCGCTGTTCGTGCTGCCGCTGCCCACGGCGCTGCTCGACCTGCTGA TCGCGGCCAACCTTGCAATCAGCCTGGTGCTCCTGATCGTGGCGATGTACGTGCCTTCGGCGCTGTCGCTGTCGACCTTT CCGTCGCTGCTGCTTTTCACCACGCTCTTTCGCCTGGCGCTGAACATCGCATCGACCAAGCTGATCCTGCTGCACGCGCA TGCGGGCAACATCATCGACACCTTCGGCAAGCTCATCGTGGGCAACAACGTGGTGGTCGGAGGCGTGGTGTTCCTCATCA TCGCCATCGTCCAGTTCATCGTCATCGCCAAGGGGTCGGAGCGGGTCGCCGAAGTTGCCGCGCGGTTCGCGCTTGACGCG ATGCCCGGCAAGCAGATGAGCATCGATGCAGACGTGCGTGCGGGCGCCTTGTCCTCGGCGCAGGCGCAAAAGCGACGCCA GCTCCTGGAGCAGGAGTCGCAGCTGCATGGCGCGATGGACGGCGCGATGAAGTTCGTGAAGGGCGACGCGATCGCAAGCA TCGTGATCGCGCTCATCAACATCCTGGCGGGGCTGACCATCGGCACCCTGATGCGCGACATGAGCCTGGGCGCCGCGCTG CAGCGCTACGCCATCCTCACGGTCGGCGACGGCATGGTGTCGCAGATCCCGTCGCTGCTGGTCTCCATCGCCGCGGGCAT CGTGATCACGCGCGTGAGCACGAGCGACAAGCGCGACTCCCAGCTCGCGCGCCAGATCGGCGAACAACTCACGGCGCACC CGCGCGCGCTCATGATCGCAGGCATCGCGATCGCAAGCTTCGCGCTGGTGCCGGGTTTTCCGAAGTGGGTGTTCGGCCTG CTCGGCGCCGTGCTGCTTGGCGGCGGCTTCGCCGTGCGGCGGCTGCGCAGCCACGGCGGAACGCCCGATTGGATCTCCAG CGACGACAGCCTGTTCGCCGAAGCGCAGGAGGGCGACAACGCCATCGCGGCGCCGCTTTCTCTGCGTTTTTCGCAGGGGT TGCGCAGGGACTTCGACCGCCACCTCCTCAACGACCGCCTCGCCGAGGTCAAGCGGTCGGTCGAGAGCGATCTCGGCCCG ATCTTTCCGCGCCTGCAACTGAGCCATTCCGATGCGCTGCCCGAGCACGACTACCAGGTGCTGGTGCACGACGTGGCGGT GGCGCGCGGCACGCTCAGGCCCGGCTGGCTGCTGCTGGACCCCGCGGCAGGCATGCACATGCCGGCGGGAGCGGAGGTCG GCGAGGCCTTCGGGCCGTTCGCCCGTGTCGTGTGGGTGCGCAACCCGGAGCCGGGCTTGGCCGCCTGGCGCGGCGAGGAG ATCGTTGCGCTTCACCTCGATCACGCGGTGCGCTGCAGCGTGAAGGAACTCATCGGCTTGCAGGAGGTGCAGCGCTTGCT GCACGCGGTGCAGCGCGAGGCGCCCGAACTCGCCGCGGAGGTGGCGCGCACCGCCTCCACGCAGCGCATCGCCGAGGTGC TCCGGCGCCTGCTGCAGGAGGGCATTCCGATCCGCAATCTGCACGCCATCTTCGAGGCGCTCACCATCTGGGCGCCGAAG GAGCAGGACGGCATCGCGCTCACCGAGCAGGTGCGCGCCCACCTGGGGCGCTACATCACCAGCCGCTATGTCGGACCCAA CCGCCAGCTCGAGGCGATCCTGTTCGAGTCGAGCCTGCTGGAGCGCCTCTTCAAGGCGGTGGACCGCACGCCCCACGGCA ACCTGTTGCTCCTGAGCCCCGCGGTCGCGCAGGACATTCGCGAGCAGGTGCGCCGCATCCTCGGCTCCACGGCCAACCGC GTGGTCGCCATCGCCTCGGCCGACGTGCGGCGCTACGTGAAGACGCTGCTGGAGCCGGTCGCTCCGCAGCTCACGGTGCT TTCTTACCAGGAAATCGACGACGACGTGGCCCTGCAGCCGGTGGGCTGGGTCACCAATCCGCAAGCCCATTGA Protein sequence : MARNPRPDRQGGSRWRELASNAGRYNDLLLAGLLVVVVALFVLPLPTALLDLLIAANLAISLVLLIVAMYVPSALSLSTF PSLLLFTTLFRLALNIASTKLILLHAHAGNIIDTFGKLIVGNNVVVGGVVFLIIAIVQFIVIAKGSERVAEVAARFALDA MPGKQMSIDADVRAGALSSAQAQKRRQLLEQESQLHGAMDGAMKFVKGDAIASIVIALINILAGLTIGTLMRDMSLGAAL QRYAILTVGDGMVSQIPSLLVSIAAGIVITRVSTSDKRDSQLARQIGEQLTAHPRALMIAGIAIASFALVPGFPKWVFGL LGAVLLGGGFAVRRLRSHGGTPDWISSDDSLFAEAQEGDNAIAAPLSLRFSQGLRRDFDRHLLNDRLAEVKRSVESDLGP IFPRLQLSHSDALPEHDYQVLVHDVAVARGTLRPGWLLLDPAAGMHMPAGAEVGEAFGPFARVVWVRNPEPGLAAWRGEE IVALHLDHAVRCSVKELIGLQEVQRLLHAVQREAPELAAEVARTASTQRIAEVLRRLLQEGIPIRNLHAIFEALTIWAPK EQDGIALTEQVRAHLGRYITSRYVGPNRQLEAILFESSLLERLFKAVDRTPHGNLLLLSPAVAQDIREQVRRILGSTANR VVAIASADVRRYVKTLLEPVAPQLTVLSYQEIDDDVALQPVGWVTNPQAH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| XC_3013 | YP_244081.1 | HrcV protein | Virulence | Hrp PAI | Protein | 2e-97 | 45 |
| hrcV | NP_636603.1 | protein HrcV | Virulence | Hrp PAI | Protein | 2e-97 | 45 |
| hrcV | YP_362156.1 | HrcV protein | Virulence | Hrp PAI | Protein | 1e-96 | 45 |
| hrcV | AAP34346.1 | HrcV | Virulence | Hrp PAI | Protein | 7e-97 | 45 |
| hrcV | YP_198723.1 | protein HrcV | Virulence | Hrp PAI | Protein | 2e-96 | 45 |
| hrcV | BAB07859.1 | HrcV | Virulence | Hrp PAI | Protein | 2e-96 | 45 |
| hrcV | NP_640760.1 | HrcV protein | Virulence | Hrp PAI | Protein | 6e-97 | 44 |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 1e-103 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Varpa_4983 | YP_004157254.1 | type III secretion protein, hrcv family | VFG0064 | Protein | 1e-101 | 42 |
| Varpa_4983 | YP_004157254.1 | type III secretion protein, hrcv family | VFG0384 | Protein | 1e-97 | 41 |
