|
Name : Varpa_4982 (Varpa_4982) Accession : YP_004157253.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Virulence Product : type III secretion protein, hrpo family Function : - COG functional category : - COG ID : - EC number : - Position : 5424249 - 5424515 bp Length : 267 bp Strand : - Note : KEGG: bvi:Bcep1808_5343 HrpO family type III secretion protein; TIGRFAM: type III secretion protein, HrpO family; PFAM: export protein FliQ family 3 DNA sequence : ATGACACCTCAGAACATTCTCGACATCACACGCGAGGGCTTGCTGCTCGTGCTCTGGATCTCGCTGCCGGTGGTGGCGGT GGCCACGTTGACCTCGCTCGTGGTCGCGGTCCTGCAGGCCGTCACGCAGGTGCAGGACCAGAACATCGGGCAATCGATCC GGATGATCGCCGTGATGGTGGCCATCATCGTGACTGCGGGCTGGCTCGGCCGCGACATGATCCGCTTTGCGGAGCGCGCC TTCCAGGTGCTCACGAGCCTCTCATGA Protein sequence : MTPQNILDITREGLLLVLWISLPVVAVATLTSLVVAVLQAVTQVQDQNIGQSIRMIAVMVAIIVTAGWLGRDMIRFAERA FQVLTSLS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lscS | AAO18039.1 | LscS | Virulence | TTSS locus | Protein | 0.009 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Varpa_4982 | YP_004157253.1 | type III secretion protein, hrpo family | VFG0187 | Protein | 0.050 | 44 |
| Varpa_4982 | YP_004157253.1 | type III secretion protein, hrpo family | VFG0395 | Protein | 0.20 | 42 |
