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Name : Varpa_4973 (Varpa_4973) Accession : YP_004157244.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Virulence Product : type III secretion apparatus h+-transporting two-sector ATPase Function : - COG functional category : N : Cell motility COG ID : COG1157 EC number : - Position : 5416824 - 5418197 bp Length : 1374 bp Strand : - Note : TIGRFAM: type III secretion apparatus H+-transporting two-sector ATPase; ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: cti:RALT DNA sequence : ATGACGGCGCGCCCCTTCGGCGCGCGCAGCGCCGCAGTGTCCGACGCTGCGCTCGGCATCGCCGCGGACCTGGAACGCGC ATTCGCCCACGTCACGCCGGTGGGCATGCGCGGGCGGGTGAGCAAGGCCGTCGGCACGCTCATCGACGCCACCGGGATCC AGGCGCATGTCGGCGAACTGGTCGAGCTGGTCACGCCGGGCGAGCCGCCGCTGCTTGCCGAAGTGGTGGGATTCCGCGGC AATACGGCGGTGCTCACGCCTCTCGGGCCGATTACCGGGATATCGGCGCTGACGGAAGTCGTGCCCACCGGCGGCGGCCA CAGCTGCCCGGTGGGATCGCAACTGCTCGGGCGGGTGCTCGATGCCATGGGGCAGCCCATCGATGGGCGCGGCGGACTCG CCGCCGCGGCGCGCCAGCCGGTGCACCGCGAGCCGGTCAACCCGCTCGCGCGCCGGATGATCGATGCGCCGCTCCCCACG GGCATTCGCGCCATCGACGCGCTGCTCACGTTGGGCGAGGGGCAGCGCATCGGCGTGTTCTCGCCGCCAGGCGTGGGCAA GAGCACCTTGCTGGGCATGCTTGCGCGCGGCTCGTCCGCCGACGTCAACGTGATCGCCCTCATCGGCGAGCGCGGCCGCG AGGTGAAGGAATTCATCGAGCACAGCCTCGGGCCCGAGGGCATGGCGAAATCGGTGATCGTGGTCTCGACCTCCGAGCGG CCGCCCATGGAGCGCATCAAGTCGGCGCATGTGGCCACGACCATCGCCGAGTATTTCCGCGACCAGGGAAAGAAGGTGCT TCTGCTGATGGATTCGCTCTCGCGCTTCGCCCGCGCGCAGCGCGAGATCGGTCTGGCCAGCGGCGAGCCGCCCACGCGGC GCAGCTATCCGCCGTCGATCTTCTCGATGCTGCCGCAACTGCTCGAGCGCGCGGGGCAGGGCGAGAGCGGCTCCATCACG GCGATCTACTCGGTGCTCACCGAAGGGGACGAGGAGAACGATCCCATCGCCGAGGAGGTGCGCTCGATCCTCGACGGCCA CGTGGTGCTGTCGCGCAAGCTTGCCGCAGCCAACCGGTACCCGGCCATCGACGTGCTCGCCAGCATCAGCCGCGTGATGC CGCTGGTGACCGACCCCGCCCACCGCGCCGCCGCGGCGCACCTGCGGGAGTTGTTGTCCAAGTACCAGGAGATGGAATTG CTGGTGCAGATCGGCGAATACAAGCCCGGTGGCGACGCGCAGGCCGACGCAGCGGTGCGGGCGCGGCCGGCGATCCTGGA ATTCCTCGCGCAGGCCCCCGGGCAGAGCGTGCCCTATGCGCAAACTCTTGCGGCCCTGCACGAATTCAGTGGGAAGGAGC AAGTGAATGGATGA Protein sequence : MTARPFGARSAAVSDAALGIAADLERAFAHVTPVGMRGRVSKAVGTLIDATGIQAHVGELVELVTPGEPPLLAEVVGFRG NTAVLTPLGPITGISALTEVVPTGGGHSCPVGSQLLGRVLDAMGQPIDGRGGLAAAARQPVHREPVNPLARRMIDAPLPT GIRAIDALLTLGEGQRIGVFSPPGVGKSTLLGMLARGSSADVNVIALIGERGREVKEFIEHSLGPEGMAKSVIVVSTSER PPMERIKSAHVATTIAEYFRDQGKKVLLLMDSLSRFARAQREIGLASGEPPTRRSYPPSIFSMLPQLLERAGQGESGSIT AIYSVLTEGDEENDPIAEEVRSILDGHVVLSRKLAAANRYPAIDVLASISRVMPLVTDPAHRAAAAHLRELLSKYQEMEL LVQIGEYKPGGDAQADAAVRARPAILEFLAQAPGQSVPYAQTLAALHEFSGKEQVNG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lscN | AAO18044.1 | LscN | Virulence | TTSS locus | Protein | 1e-109 | 57 |
| hrcN | AAP34339.1 | HrcN | Virulence | Hrp PAI | Protein | 7e-109 | 57 |
| hrcN | YP_198730.1 | type III secretion system ATPase | Virulence | Hrp PAI | Protein | 1e-108 | 56 |
| hrpB6 | BAB07852.1 | HrpB6 | Virulence | Hrp PAI | Protein | 1e-108 | 56 |
| hrpB6 | AAF61281.1 | HrpB6 | Virulence | Hrp PAI | Protein | 1e-108 | 56 |
| hrcN | YP_362163.1 | type III secretion system ATPase | Virulence | Hrp PAI | Protein | 2e-108 | 56 |
| hrpB6 | AAB08461.1 | HrpB6 | Virulence | Hrp PAI | Protein | 2e-108 | 56 |
| hrcN | NP_640767.1 | type III secretion system ATPase | Virulence | Hrp PAI | Protein | 6e-108 | 56 |
| XC_3006 | YP_244074.1 | type III secretion system ATPase | Virulence | Hrp PAI | Protein | 2e-106 | 56 |
| hrcN | NP_636610.1 | type III secretion system ATPase | Virulence | Hrp PAI | Protein | 2e-106 | 56 |
| YPO0267 | YP_002345348.1 | type III secretion system ATPase | Virulence | Not named | Protein | 3e-89 | 54 |
| ssaN | NP_456113.1 | putative type III secretion ATP synthase | Virulence | SPI-2 | Protein | 3e-88 | 53 |
| ssaN | CAA70537.1 | secretion system apparatus | Virulence | SPI-2 | Protein | 6e-89 | 53 |
| ssaN | NP_805086.1 | type III secretion system ATPase | Virulence | SPI-2 | Protein | 3e-88 | 53 |
| ssaN | NP_460380.1 | type III secretion system ATPase | Virulence | SPI-2 | Protein | 8e-89 | 53 |
| ssaN | YP_216423.1 | type III secretion system ATPase | Virulence | SPI-2 | Protein | 6e-89 | 53 |
| escN | AFO66300.1 | putative LEE-encoded type III secretion system ATPase | Virulence | SESS LEE | Protein | 1e-82 | 51 |
| escN | AFO66415.1 | putative LEE-encoded type III secretion system ATPase | Virulence | SESS LEE | Protein | 1e-82 | 51 |
| hrcN | AAG33879.1 | HrcN | Virulence | Hrp PAI | Protein | 2e-78 | 50 |
| escN | AAL57542.1 | EscN | Virulence | LEE | Protein | 8e-82 | 50 |
| escN | CAC81862.1 | EscN protein | Virulence | LEE II | Protein | 6e-82 | 50 |
| escN | CAI43874.1 | EscN protein | Virulence | LEE | Protein | 9e-82 | 50 |
| escN | AAK26715.1 | EscN | Virulence | LEE | Protein | 8e-82 | 50 |
| escN | YP_003223475.1 | translocator EscN | Virulence | LEE | Protein | 1e-81 | 50 |
| unnamed | AAL06369.1 | EscN | Virulence | LEE | Protein | 3e-83 | 50 |
| hrcN | AAR25633.1 | type III secretion cytoplasmic ATPase HrcN | Not tested | Not named | Protein | 4e-81 | 49 |
| hrcN | AAB06001.1 | HrcN | Virulence | Hrp PAI | Protein | 2e-85 | 49 |
| hrcN | NP_791227.1 | type III secretion cytoplasmic ATPase HrcN | Virulence | Hrp PAI | Protein | 3e-80 | 49 |
| hrcN | AAT96339.1 | HrcN | Virulence | S-PAI | Protein | 1e-86 | 49 |
| hrcN | ABA47275.1 | HrcN | Virulence | S-PAI | Protein | 3e-88 | 49 |
| hrcN | AAT96258.1 | HrcN | Virulence | S-PAI | Protein | 3e-86 | 49 |
| hrcN | AAT96299.1 | HrcN | Virulence | S-PAI | Protein | 2e-86 | 49 |
| escN | YP_003232153.1 | T3SS structure protein EscN | Virulence | LEE | Protein | 9e-82 | 49 |
| escN | AAC38383.1 | EscN | Virulence | LEE | Protein | 2e-81 | 49 |
| escN | AAC31513.1 | L0034 | Virulence | LEE | Protein | 2e-81 | 49 |
| escN | NP_290268.1 | hypothetical protein | Virulence | LEE | Protein | 2e-81 | 49 |
| unnamed | ACU09458.1 | type III secretion apparatus H+-transporting two-sector ATPase | Virulence | LEE | Protein | 2e-81 | 49 |
| ECs4568 | NP_312595.1 | EscN | Virulence | LEE | Protein | 2e-81 | 49 |
| escN | YP_003236088.1 | translocator EscN | Virulence | LEE | Protein | 2e-81 | 49 |
| hrcN | AAT96141.1 | HrcN | Virulence | T-PAI | Protein | 2e-81 | 48 |
| hrcN | AAT96195.1 | HrcN | Virulence | T-PAI | Protein | 2e-81 | 48 |
| hrcN | ABQ88354.1 | HrcN | Virulence | Hrp PAI | Protein | 7e-77 | 47 |
| hrpJ4 | AAA81942.1 | HrpJ4 | Virulence | Hrp PAI | Protein | 7e-77 | 47 |
| invC | AAS66861.1 | InvC | Not tested | SSR-2 | Protein | 8e-73 | 47 |
| ysaN | AAS66842.1 | YsaN | Not tested | SSR-1 | Protein | 1e-76 | 45 |
| spaI | NP_457288.1 | secretory apparatus ATP synthase (associated with virulence) | Virulence | SPI-1 | Protein | 1e-75 | 44 |
| spaI | NP_806497.1 | ATP synthase SpaL | Virulence | SPI-1 | Protein | 1e-75 | 44 |
| invC | NP_461815.1 | ATP synthase SpaL | Virulence | SPI-1 | Protein | 1e-75 | 44 |
| invC | YP_217813.1 | ATP synthase SpaL | Virulence | SPI-1 | Protein | 1e-75 | 44 |
| ECs3730 | NP_311757.1 | ATP synthase SpaL | Not tested | LIM | Protein | 2e-72 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Varpa_4973 | YP_004157244.1 | type III secretion apparatus h+-transporting two-sector ATPase | VFG0192 | Protein | 2e-114 | 58 |
| Varpa_4973 | YP_004157244.1 | type III secretion apparatus h+-transporting two-sector ATPase | VFG0048 | Protein | 1e-108 | 57 |
| Varpa_4973 | YP_004157244.1 | type III secretion apparatus h+-transporting two-sector ATPase | VFG0390 | Protein | 6e-107 | 57 |
| Varpa_4973 | YP_004157244.1 | type III secretion apparatus h+-transporting two-sector ATPase | VFG0515 | Protein | 3e-89 | 53 |
| Varpa_4973 | YP_004157244.1 | type III secretion apparatus h+-transporting two-sector ATPase | VFG2144 | Protein | 1e-93 | 52 |
| Varpa_4973 | YP_004157244.1 | type III secretion apparatus h+-transporting two-sector ATPase | VFG1254 | Protein | 1e-89 | 50 |
| Varpa_4973 | YP_004157244.1 | type III secretion apparatus h+-transporting two-sector ATPase | VFG2499 | Protein | 8e-85 | 50 |
| Varpa_4973 | YP_004157244.1 | type III secretion apparatus h+-transporting two-sector ATPase | VFG0730 | Protein | 1e-81 | 49 |
| Varpa_4973 | YP_004157244.1 | type III secretion apparatus h+-transporting two-sector ATPase | VFG0812 | Protein | 1e-81 | 49 |
| Varpa_4973 | YP_004157244.1 | type III secretion apparatus h+-transporting two-sector ATPase | VFG2331 | Protein | 7e-79 | 49 |
| Varpa_4973 | YP_004157244.1 | type III secretion apparatus h+-transporting two-sector ATPase | VFG1778 | Protein | 3e-70 | 45 |
| Varpa_4973 | YP_004157244.1 | type III secretion apparatus h+-transporting two-sector ATPase | VFG2459 | Protein | 1e-74 | 44 |
| Varpa_4973 | YP_004157244.1 | type III secretion apparatus h+-transporting two-sector ATPase | VFG0555 | Protein | 4e-76 | 44 |
| Varpa_4973 | YP_004157244.1 | type III secretion apparatus h+-transporting two-sector ATPase | VFG1008 | Protein | 6e-68 | 43 |
