Gene Information

Name : Varpa_4948 (Varpa_4948)
Accession : YP_004157219.1
Strain : Variovorax paradoxus EPS
Genome accession: NC_014931
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 5371691 - 5372473 bp
Length : 783 bp
Strand : -
Note : KEGG: vap:Vapar_3559 two component heavy metal response transcriptional regulator winged helix family; PFAM: transcriptional regulator domain-containing protein; response regulator receiver; SMART: response regulator receiver

DNA sequence : 
GTGCGACTTAATGTTTCCCAGCTTCCTTTCGAGACCGCCTTGAGCGGCTCCTTTCTCGGCGCCGGCCATGCGAGCGCTGC
CCAGATCGATGACGAGATCGATCCCCTGCGCATCCTGCTCATCGACCATCAGTCGACCCAGTGCAGATCGTTCAGCGAGG
GCCTGGAGAGCAACGGGTTTGCCATCGACATCGCGACCGGCGACAACGCCACCGCGAACGCGGCGCTCGCGGAAGACTAC
GCGCTCATCCTCCTGAATTCGATGCGAACCGGACATGCAGGATTCAGTGCCGTCCAGGCGATCCGGCGCAAGACCGATGC
ACCGCTTCTGGTCCTGACCGAACGCGACAGCGTTGCCGCCCGCATCGCGGGCCTGGAACTGGGCGCGAGCGACTACCTGG
TCAAGCCCTTCTCGCTTTCCGACCTGCTCGGGCGCGTCACGGCGTTGGCCCGTCGCCCGCGCGTGGTTCGCCAGCCGGTG
CTGCGCCTGGGCGATCTGGAACTGGACGAACGCACCACGCGGTGCACCCGCGAGGGCATGGAGCTCGATCTGACCCGGAT
GGAATTTGCGCTGCTGCTGGTGCTGCTTCGCAGCCAGGGCGAAGTGCTCTCCCGGCAACAGCTCTCGCAGCGCGTGTGGA
ACAGGGAATTCGACGGCAAGAACAACGCCGTCGACGTGGCCGTGCTGCGCCTGCGCAGCAAGCTCGACGCACCGTTCGAG
AAGAGGCTGTTGCATTCCGTGCGCGGCGAGGGGTATGTGCTTGAAGAGCGTCCCGGCGCTTGA

Protein sequence : 
MRLNVSQLPFETALSGSFLGAGHASAAQIDDEIDPLRILLIDHQSTQCRSFSEGLESNGFAIDIATGDNATANAALAEDY
ALILLNSMRTGHAGFSAVQAIRRKTDAPLLVLTERDSVAARIAGLELGASDYLVKPFSLSDLLGRVTALARRPRVVRQPV
LRLGDLELDERTTRCTREGMELDLTRMEFALLLVLLRSQGEVLSRQQLSQRVWNREFDGKNNAVDVAVLRLRSKLDAPFE
KRLLHSVRGEGYVLEERPGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-38 42
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-38 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Varpa_4948 YP_004157219.1 winged helix family two component transcriptional regulator BAC0083 Protein 1e-39 42
Varpa_4948 YP_004157219.1 winged helix family two component transcriptional regulator BAC0125 Protein 9e-42 42
Varpa_4948 YP_004157219.1 winged helix family two component transcriptional regulator BAC0197 Protein 4e-42 42
Varpa_4948 YP_004157219.1 winged helix family two component transcriptional regulator BAC0638 Protein 2e-31 41
Varpa_4948 YP_004157219.1 winged helix family two component transcriptional regulator BAC0308 Protein 6e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Varpa_4948 YP_004157219.1 winged helix family two component transcriptional regulator VFG0596 Protein 2e-38 41