Gene Information

Name : Varpa_4678 (Varpa_4678)
Accession : YP_004156952.1
Strain : Variovorax paradoxus EPS
Genome accession: NC_014931
Putative virulence/resistance : Virulence
Product : sugar transferase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG2148
EC number : -
Position : 5099559 - 5100119 bp
Length : 561 bp
Strand : -
Note : KEGG: pna:Pnap_3481 sugar transferase; manually curated; PFAM: sugar transferase

DNA sequence : 
GTGAAACGCCTGTTTGATCTGCTCTTAGCGCTCTGCGCGGCTGCCGTGTTGTTAGTGCCTTTAGTCTTGGTCGCCTTGGC
GGTCCGCCTTACTTCCCGAGGACCCGTACTTTATTGGTCCGACCGCGTTGGTAGGAATAATCGAATTTTTAAGATGCCGA
AGTTCCGCAGCATGCGGACCGGTACACCTGCTGTCGCCACGCATCTGTTAACGGATCCGAAGTCGCATTTAACATCGATT
GGTCCGCTATTACGAAAATCCAGCCTCGATGAATTACCGCAGCTTTGGAGCATTCTCAAAGGCGATATGAGCTTTGTAGG
GCCGCGTCCGGCGCTCTTCAACCAGACAGACCTGATCGATTTGCGGACGGGCCATGGCGTGCACTTGTTGGTGCCGGGGC
TCACGGGTTGGGCTCAAGTCAACGGGCGCGACGAATTGCCGATTCCGGTGAAGGTTCAGTTCGATGCTGAATACCTGCAG
CGCCGTTCCTTGGCATTCGACATCCGCATCCTGTGGCTTACGTTCGTCAAAGTGCTCAAGCGCGATGGCGTGACGCATTG
A

Protein sequence : 
MKRLFDLLLALCAAAVLLVPLVLVALAVRLTSRGPVLYWSDRVGRNNRIFKMPKFRSMRTGTPAVATHLLTDPKSHLTSI
GPLLRKSSLDELPQLWSILKGDMSFVGPRPALFNQTDLIDLRTGHGVHLLVPGLTGWAQVNGRDELPIPVKVQFDAEYLQ
RRSLAFDIRILWLTFVKVLKRDGVTH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1N AAL26667.1 type 8 capsule synthesis gene Virulence SCCcap1 Protein 4e-33 52
SSP0070 YP_300160.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 3e-31 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Varpa_4678 YP_004156952.1 sugar transferase VFG1369 Protein 5e-27 48
Varpa_4678 YP_004156952.1 sugar transferase VFG1309 Protein 8e-31 46