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Name : Varpa_4641 (Varpa_4641) Accession : YP_004156915.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Virulence Product : winged helix family two component heavy metal response transcriptional regulator Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG0745 EC number : - Position : 5055627 - 5056334 bp Length : 708 bp Strand : - Note : TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; KEGG: vei:Veis_0344 two component heavy metal response transcriptional regulator; SMART: response regulator receiver DNA sequence : ATGAAGATCCTGATTGTCGAAGACGAACTGAGAACCGCCGACTACCTCAGCAAGGGCCTGACCGAGCAGGGCTGCACGGT CGACGCGGCGCACAACGGCATCGACGGCCAGCACCTCGCGCTCACCCACGACTACGACGTGATCGTGCTCGACGTGATGC TGCCGGGGCAGGACGGCTTCGCGGTGCTGCGCGCATTGCGCGCCGTCAAGCAGACGCCGGTCATCATGCTCACCGCGCGT GACCGCGTCGAAGACCGCATCAAGGGCCTGCACGAAGGCGCGGACGACTACCTCGTCAAGCCTTTCTCGTTCCTCGAACT GCTGGCACGCCTGCAGGCGCTCAACCGGCGCGGCCGCAAGCAAGAGCCGGTGCAACTGCGCATCGCCAACCTGCAGATCG ACCTGCTCGCGCGCAAGGCCTTCCGCGGTGCGACGCGCATCGACCTCACGGCCAAGGAGTTCGCGCTGCTCGCCGTGCTC GCGCGCCGTCAGGGCGAAATTCTCTCGAAGACCGCCATCGCCGAGCTGGTGTGGGACATGAACTTCGACAGCAACACCAA CGTGGTCGAGGTGGCGATCAAGCGGCTGCGCGACAAGATCGATGCGCCCTTCAGCCCCAAGCTGCTGCACACGATCCGCG GCATGGGCTACGTGATGGAGTTGAGGGACACGGAGAGCGAAGCCCAAGGGGAGGGCGGCGCCCTGTGA Protein sequence : MKILIVEDELRTADYLSKGLTEQGCTVDAAHNGIDGQHLALTHDYDVIVLDVMLPGQDGFAVLRALRAVKQTPVIMLTAR DRVEDRIKGLHEGADDYLVKPFSFLELLARLQALNRRGRKQEPVQLRIANLQIDLLARKAFRGATRIDLTAKEFALLAVL ARRQGEILSKTAIAELVWDMNFDSNTNVVEVAIKRLRDKIDAPFSPKLLHTIRGMGYVMELRDTESEAQGEGGAL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| copR | NP_460069.2 | transcriptional regulatory protein YedW | Not tested | SPI-5 | Protein | 3e-53 | 56 |
| copR | AAC33719.1 | regulatory protein CopR | Not tested | SPI-5 | Protein | 9e-53 | 55 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Varpa_4641 | YP_004156915.1 | winged helix family two component heavy metal response transcriptional regulator | BAC0083 | Protein | 2e-59 | 60 |
| Varpa_4641 | YP_004156915.1 | winged helix family two component heavy metal response transcriptional regulator | BAC0125 | Protein | 2e-64 | 60 |
| Varpa_4641 | YP_004156915.1 | winged helix family two component heavy metal response transcriptional regulator | BAC0197 | Protein | 6e-63 | 58 |
| Varpa_4641 | YP_004156915.1 | winged helix family two component heavy metal response transcriptional regulator | BAC0111 | Protein | 3e-60 | 56 |
| Varpa_4641 | YP_004156915.1 | winged helix family two component heavy metal response transcriptional regulator | BAC0638 | Protein | 3e-53 | 55 |
| Varpa_4641 | YP_004156915.1 | winged helix family two component heavy metal response transcriptional regulator | BAC0347 | Protein | 4e-56 | 52 |
| Varpa_4641 | YP_004156915.1 | winged helix family two component heavy metal response transcriptional regulator | BAC0308 | Protein | 1e-54 | 52 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Varpa_4641 | YP_004156915.1 | winged helix family two component heavy metal response transcriptional regulator | VFG0596 | Protein | 1e-53 | 56 |
| Varpa_4641 | YP_004156915.1 | winged helix family two component heavy metal response transcriptional regulator | VFG1389 | Protein | 5e-36 | 44 |
| Varpa_4641 | YP_004156915.1 | winged helix family two component heavy metal response transcriptional regulator | VFG1386 | Protein | 8e-33 | 42 |
| Varpa_4641 | YP_004156915.1 | winged helix family two component heavy metal response transcriptional regulator | VFG1390 | Protein | 1e-39 | 41 |
