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Name : Varpa_4578 (Varpa_4578) Accession : YP_004156853.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Unknown Product : transposase is3/is911 family protein Function : - COG functional category : L : Replication, recombination and repair COG ID : COG2801 EC number : - Position : 4989767 - 4991050 bp Length : 1284 bp Strand : + Note : PFAM: transposase IS3/IS911 family protein; Integrase catalytic region; KEGG: ctt:CtCNB1_4037 transposase DNA sequence : GTGAGTACGACTAGGAATACGGATACCGTCGAAGTGATCATGAGGGACCAGCGCCGCAGGCGCTGGTCCCTTGCAGAGAA GGCCGCACTGGTTCGTCGAAGCTACGAACCTGGCATGAGCGTGTCGCTCGTCGCACGTCAGGAAGGCGTTGCCGCCAGCC TGCTGTTCCAGTGGCGCAAGCTGGAGCGGCAAGGGGCGCTGACGGCTGTATCGGCGGGCGAGGCTGTGGTGCCGGCTTCG GAACTGGCAGCCGCTCGTGCCGAGATCGCCAAGCTACAGCGCGTGCTTGGCAAGAAGACGCTGGAGAACGAGATCCTCAA GGAAGCTGTGGAGTACGCCGCGGAAAAAAAAATGGATTGCGCGCTCGCCCTTGCTGGACGGGGACGGCCAGTGAAGGCCG TCTGCCAGGCCCTTGGGTTGGCGCGCTCGAACATTCATCGCTTGCAAGCTCGCTCCGAGTCCTGGATCGACGCCCGGACA CGACGCACGGCGCCTGCAAGCGACGTGGCCTTGCTCGACGAGATCAAGGCCCAGATCACCGAGTTGCCGACCTATGGCTA CCGGCGTGCCTGCGCGTTGGTGAACCGGCATCGAGCCACCACCGGTGCGACGCGAGTGAACGCCAAGCGCATCTACCGCG TGATGGCGGCTCATGCATTGCTGCTACCGAAGGCGCCGAGACGGCGCCAGTCCAGCCGGCCCCATGAGGGCAAGGTGGCC GTCGCGCACAGCGACATGCGCTGGTGCTCGGACGGCTTCGAGATCAAGTGTGATTCGGGGCAGACCGTGACCGCGACCTT CACCAAGGACTGCTGCGACCGTGAGATCCTGGCCTATCGGGCATGGGAGGGCAAAGGGCTGCCGGGCGAGCCGGTGCGCG AAATGCTCATCGAGGCCGTGGAGAAGCGCTTCGGCGGCGTCGAGGGTGTTCCCAGTACCCACGTCTTGGAGTTCCTCTCG GACAACGGGGGCGCCTACATCGCTGCCGAGACCCGGCAGATCGCTCGACAACTGGGCCTGAGCCCAGTCAACACGCCCGT GTGCAGCCCCCAGAGCAACGGCATCGCCGAGAGCTTTGTGAACACGTTCAAGCGCGACTACGTCAGCCGCATGGACCTTG CCGATGCGAGAACGGTGATGGCGCAGATGGCCGCAGCCTTCGAGCACTTCAATGAGGTGCATCCGCACTCGGCATTGAAG ATGAAATCACCCAGGGAGTTCAGGCAGCATCGCGCTGCCAACCAGGGTCTTGCTCAGATCGAGCAGACGCTACATTGCGA ATAG Protein sequence : MSTTRNTDTVEVIMRDQRRRRWSLAEKAALVRRSYEPGMSVSLVARQEGVAASLLFQWRKLERQGALTAVSAGEAVVPAS ELAAARAEIAKLQRVLGKKTLENEILKEAVEYAAEKKMDCALALAGRGRPVKAVCQALGLARSNIHRLQARSESWIDART RRTAPASDVALLDEIKAQITELPTYGYRRACALVNRHRATTGATRVNAKRIYRVMAAHALLLPKAPRRRQSSRPHEGKVA VAHSDMRWCSDGFEIKCDSGQTVTATFTKDCCDREILAYRAWEGKGLPGEPVREMLIEAVEKRFGGVEGVPSTHVLEFLS DNGGAYIAAETRQIARQLGLSPVNTPVCSPQSNGIAESFVNTFKRDYVSRMDLADARTVMAQMAAAFEHFNEVHPHSALK MKSPREFRQHRAANQGLAQIEQTLHCE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SF3708 | NP_709447.1 | IS2 transposase TnpB | Not tested | SHI-2 | Protein | 7e-60 | 50 |
| SF3721 | NP_709460.1 | IS2 transposase TnpB | Not tested | SHI-2 | Protein | 7e-60 | 50 |
| S4061 | NP_839230.2 | insertion element IS2 transposase InsD | Not tested | SHI-2 | Protein | 4e-60 | 50 |
| S3189 | NP_838472.2 | insertion element IS2 transposase InsD | Not tested | SHI-1 | Protein | 7e-59 | 50 |
| S4050 | NP_839218.2 | insertion element IS2 transposase InsD | Not tested | SHI-2 | Protein | 7e-60 | 50 |
| insD | YP_002414033.1 | insertion element IS2 transposase InsD | Not tested | Not named | Protein | 8e-60 | 49 |
| aec49 | AAW51732.1 | Aec49 | Not tested | AGI-3 | Protein | 1e-61 | 49 |
| unnamed | CAC39283.1 | hypothetical protein | Not tested | LPA | Protein | 6e-55 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Varpa_4578 | YP_004156853.1 | transposase is3/is911 family protein | VFG0621 | Protein | 3e-60 | 50 |
| Varpa_4578 | YP_004156853.1 | transposase is3/is911 family protein | VFG0608 | Protein | 3e-60 | 50 |
| Varpa_4578 | YP_004156853.1 | transposase is3/is911 family protein | VFG1732 | Protein | 3e-60 | 49 |
