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Name : Varpa_4515 (Varpa_4515) Accession : YP_004156793.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Resistance Product : major facilitator superfamily protein Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG2814 EC number : - Position : 4897971 - 4899230 bp Length : 1260 bp Strand : - Note : PFAM: major facilitator superfamily MFS_1; KEGG: xcv:XCV4394 drug:H+ antiporter-1 family protein DNA sequence : GTGAGCGCCACCCTTCCAGCACCGCGCGTGCGCCGCGCCGCGCTCGCCTTCATCTTCGTGACGGTGCTGATCGACTTCCT CGCGTTCGGCCTGATCCTGCCCGGCCTGCCGCACCTGGTGGAGCGCCTGGCCGGCGGCAGCACCGCGACGGCGGCGTACT GGATCGCGGTGTTCGGCACCGCGTTCGCGGCGATCCAGTTCGTGAGTTCGCCGATCCAGGGCGCGCTGTCCGATCGCTTC GGGCGGCGACCGGTGATCCTGTTGTCGTGCCTCGGCCTCGGCGTGGATTTCGTGTTCATGGCCCTGGCCGACAGCCTGCC GTGGCTGTTCGTCGGCCGGGTCGTGTCCGGCGTGTTCTCGGCCAGCTTCACCATCGCCAATGCCTACATCGCCGATGTGA CGCCGCCGGAAGATCGCGCCCGCAGCTACGGCATCGTGGGCGCGGCCTTCGGCATGGGCCTGGTGTTCGGGCCTGTGCTC GGCGGGCAACTGAGCCACATCGATCCGCGCCTGCCGTTCTGGTTCGCGGCCGGCCTGACGCTTCTGAGCTTCTGCTACGG ATGGTTCGTGCTGCCCGAGTCGCTGTCGCCGGAGCGGCGCGCCCGCAAGTTCGACTGGTCGCACGCCAATCCGCTCGGCT CGCTGCTGCTGCTCAAGCGCTATCCACAGGTGTTCGGGCTGGCGGCGGTGATTTTCCTCGTCAACCTGGCCCAGTACGTC TACCCGAGCGTGTTCGTGCTGTTCGCCGACTACCGCTACCACTGGAAGGAAGACGCGGTGGGCTGGGTGCTCGGCGCGGT GGGCGTGCTCAGCGTGCTGGTCAACGCGCTGTTGATCGGGCCGGGCGTGAAGCGCTTCGGCGAGCGCCGTGCGCTGCTGT TCGGCATGGGCTTCGGCGTGCTCGGTTTCATCGTCATCGGCTTGGCTGATGCGGGCTGGATGCTTCTGGCCGCGCTGCCG TTCGGCACCTTGCTGGCGTTCGCCGGGCCGGCGGCGCAGGCGCTGGTCACCCGCCAGGTCGGCGCGGCCGAGCAGGGCCG CATCCAGGGCGCGCTGACGAGCCTGGTGTCGGTGGCGGGCATCGTCGGGCCGACGATGTTCGCCGGCAGCTTCGGCTATT TCATCGCCACGGACGCGCCCGTCCACCTGCCGGGCGCGCCGTTCTTCATCGCCGCGCTGTTCCTCTGCATCGGCACGCTG ATCGCGTGGCGCTACGCACAGGCGAAGGCGACGGCAGCAGCCGTGCCCGAGCCGACCTGA Protein sequence : MSATLPAPRVRRAALAFIFVTVLIDFLAFGLILPGLPHLVERLAGGSTATAAYWIAVFGTAFAAIQFVSSPIQGALSDRF GRRPVILLSCLGLGVDFVFMALADSLPWLFVGRVVSGVFSASFTIANAYIADVTPPEDRARSYGIVGAAFGMGLVFGPVL GGQLSHIDPRLPFWFAAGLTLLSFCYGWFVLPESLSPERRARKFDWSHANPLGSLLLLKRYPQVFGLAAVIFLVNLAQYV YPSVFVLFADYRYHWKEDAVGWVLGAVGVLSVLVNALLIGPGVKRFGERRALLFGMGFGVLGFIVIGLADAGWMLLAALP FGTLLAFAGPAAQALVTRQVGAAEQGRIQGALTSLVSVAGIVGPTMFAGSFGYFIATDAPVHLPGAPFFIAALFLCIGTL IAWRYAQAKATAAAVPEPT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tetA | YP_006098396.1 | tetracycline resistance protein | Not tested | Tn2411 | Protein | 3e-40 | 41 |
| tetA(A) | ACK44537.1 | TetA(A) | Not tested | SGI1 | Protein | 2e-40 | 41 |
| tetA(A) | AGK07027.1 | TetA(A) | Not tested | SGI1 | Protein | 2e-40 | 41 |
| tetA(A) | AGK07085.1 | TetA(A) | Not tested | SGI1 | Protein | 2e-40 | 41 |
| tetA(A) | ACN81011.1 | TetA(A) | Not tested | AbaR5 | Protein | 3e-40 | 41 |
| tetA | CAJ77066.1 | Tetracycline resistance protein | Not tested | AbaR1 | Protein | 2e-40 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Varpa_4515 | YP_004156793.1 | major facilitator superfamily protein | CP001485.1.gene2821. | Protein | 1e-40 | 41 |
| Varpa_4515 | YP_004156793.1 | major facilitator superfamily protein | NC_010410.6002597.p0 | Protein | 1e-40 | 41 |
