Gene Information

Name : Varpa_4515 (Varpa_4515)
Accession : YP_004156793.1
Strain : Variovorax paradoxus EPS
Genome accession: NC_014931
Putative virulence/resistance : Resistance
Product : major facilitator superfamily protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG2814
EC number : -
Position : 4897971 - 4899230 bp
Length : 1260 bp
Strand : -
Note : PFAM: major facilitator superfamily MFS_1; KEGG: xcv:XCV4394 drug:H+ antiporter-1 family protein

DNA sequence :
GTGAGCGCCACCCTTCCAGCACCGCGCGTGCGCCGCGCCGCGCTCGCCTTCATCTTCGTGACGGTGCTGATCGACTTCCT
CGCGTTCGGCCTGATCCTGCCCGGCCTGCCGCACCTGGTGGAGCGCCTGGCCGGCGGCAGCACCGCGACGGCGGCGTACT
GGATCGCGGTGTTCGGCACCGCGTTCGCGGCGATCCAGTTCGTGAGTTCGCCGATCCAGGGCGCGCTGTCCGATCGCTTC
GGGCGGCGACCGGTGATCCTGTTGTCGTGCCTCGGCCTCGGCGTGGATTTCGTGTTCATGGCCCTGGCCGACAGCCTGCC
GTGGCTGTTCGTCGGCCGGGTCGTGTCCGGCGTGTTCTCGGCCAGCTTCACCATCGCCAATGCCTACATCGCCGATGTGA
CGCCGCCGGAAGATCGCGCCCGCAGCTACGGCATCGTGGGCGCGGCCTTCGGCATGGGCCTGGTGTTCGGGCCTGTGCTC
GGCGGGCAACTGAGCCACATCGATCCGCGCCTGCCGTTCTGGTTCGCGGCCGGCCTGACGCTTCTGAGCTTCTGCTACGG
ATGGTTCGTGCTGCCCGAGTCGCTGTCGCCGGAGCGGCGCGCCCGCAAGTTCGACTGGTCGCACGCCAATCCGCTCGGCT
CGCTGCTGCTGCTCAAGCGCTATCCACAGGTGTTCGGGCTGGCGGCGGTGATTTTCCTCGTCAACCTGGCCCAGTACGTC
TACCCGAGCGTGTTCGTGCTGTTCGCCGACTACCGCTACCACTGGAAGGAAGACGCGGTGGGCTGGGTGCTCGGCGCGGT
GGGCGTGCTCAGCGTGCTGGTCAACGCGCTGTTGATCGGGCCGGGCGTGAAGCGCTTCGGCGAGCGCCGTGCGCTGCTGT
TCGGCATGGGCTTCGGCGTGCTCGGTTTCATCGTCATCGGCTTGGCTGATGCGGGCTGGATGCTTCTGGCCGCGCTGCCG
TTCGGCACCTTGCTGGCGTTCGCCGGGCCGGCGGCGCAGGCGCTGGTCACCCGCCAGGTCGGCGCGGCCGAGCAGGGCCG
CATCCAGGGCGCGCTGACGAGCCTGGTGTCGGTGGCGGGCATCGTCGGGCCGACGATGTTCGCCGGCAGCTTCGGCTATT
TCATCGCCACGGACGCGCCCGTCCACCTGCCGGGCGCGCCGTTCTTCATCGCCGCGCTGTTCCTCTGCATCGGCACGCTG
ATCGCGTGGCGCTACGCACAGGCGAAGGCGACGGCAGCAGCCGTGCCCGAGCCGACCTGA

Protein sequence :
MSATLPAPRVRRAALAFIFVTVLIDFLAFGLILPGLPHLVERLAGGSTATAAYWIAVFGTAFAAIQFVSSPIQGALSDRF
GRRPVILLSCLGLGVDFVFMALADSLPWLFVGRVVSGVFSASFTIANAYIADVTPPEDRARSYGIVGAAFGMGLVFGPVL
GGQLSHIDPRLPFWFAAGLTLLSFCYGWFVLPESLSPERRARKFDWSHANPLGSLLLLKRYPQVFGLAAVIFLVNLAQYV
YPSVFVLFADYRYHWKEDAVGWVLGAVGVLSVLVNALLIGPGVKRFGERRALLFGMGFGVLGFIVIGLADAGWMLLAALP
FGTLLAFAGPAAQALVTRQVGAAEQGRIQGALTSLVSVAGIVGPTMFAGSFGYFIATDAPVHLPGAPFFIAALFLCIGTL
IAWRYAQAKATAAAVPEPT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetA YP_006098396.1 tetracycline resistance protein Not tested Tn2411 Protein 3e-40 41
tetA(A) ACK44537.1 TetA(A) Not tested SGI1 Protein 2e-40 41
tetA(A) AGK07027.1 TetA(A) Not tested SGI1 Protein 2e-40 41
tetA(A) AGK07085.1 TetA(A) Not tested SGI1 Protein 2e-40 41
tetA(A) ACN81011.1 TetA(A) Not tested AbaR5 Protein 3e-40 41
tetA CAJ77066.1 Tetracycline resistance protein Not tested AbaR1 Protein 2e-40 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Varpa_4515 YP_004156793.1 major facilitator superfamily protein NC_010410.6002597.p0 Protein 1e-40 41
Varpa_4515 YP_004156793.1 major facilitator superfamily protein CP001485.1.gene2821. Protein 1e-40 41