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Name : Varpa_4504 (Varpa_4504) Accession : YP_004156782.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Virulence Product : type II secretion system protein e Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 4882972 - 4884858 bp Length : 1887 bp Strand : + Note : PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: vap:Vapar_1966 type II secretion system protein E DNA sequence : ATGTCATCCGCCGAAGTCACCACACCGGAACAACTGCTGACCGAACTCGATGCCCAGACCCGCATGCCGATCGCGCAGAT CGGCCAGACGCTGATGTCGCTGGGCATGGTCACCGCGGCGCAGTTGCAAGGTGGACTGGTTCAGCAGCAGCTCGCCCCCA CGGTGCCGCTGGGCGAGATGCTGGTGCGCATGGGCTTGATCAACCGCGCCCAGCTGCAGGCGGCGCTGGTGCACAAGATG GGCTATCCGCTGGTCAACCTGCACCTGTTCGCGCCGTCCGCAGAGGCCCTGCGCAAGATCGGCCACAGCGCGGCGCAGCG CCTGCAGGTGATGCCGCTGATGCTGCACGAGGGCCGCCTGGTGCTCGCGCTGGACGATCCCTCGAACCGGCGTTCGGCCA TCGACGAAGTGGAATTCATTGCCCAGTCGAAGGTGATTCCGGTGGTCGGGAAATGCCTCGACCTGGACGGCGTGCTGCAC AAGGCCTACGAGAAGCTCGGCGACCCGGCGACGCCGCGCCCGGCCAGCTTCGATCCGATGCGGCCGCTGGAGTTCGACAT GGCCGGCACCAGCGAACTGCTCGAAACGCTCGAGAAAGAAGGCCGCTCGATCGCCAGCACCGAGGCGCCGATCGAGCAGT CGGACAACTCGCTGGTGCGCATGATCAACAGCATGATCCTGGAGGCGCATCGCGAAGGCGCATCGGACATCCACGTCGAA AGCTCGCCCGGCGACGAAAAGACCCGCATCCGGTTTCGCCGCGACGGCCGGCTCTATACGTACCTGGAGCTTCCGTCCAG CTATCGCAACGCCGTGGTGGCGCGCATCAAGATCATGTGCGACCTGGACATCAGCGAGAAACGCAAGCCGCAGGACGGCA AGATCAACTTCAGCAAGTATTCGCCGCAGCACCGCATCGAACTGCGCGTTGCCACCATTCCGACCAGCAACGGCCTGGAA GACGTGGTCATGCGCATCCTTGCATCGGCCAAGCCCATCGCGATGAACGCGCTGGGCCTCTCGCCGCGCAATCTCGCGCA GCTCACCCAGGCGGTCGAGCGCCCCTACGGCATGGTGCTGTGCGTCGGCCCCACGGGTTCGGGCAAGACCACGACGCTGC ACTCGGCGCTGATGCACATCAACACGCCGGAGCGAAAGATCTGGACGGCGGAAGACCCGATCGAGATCACGCAGGCCGGC CTCCGGCAGGTGCAGGTCAATCCACGGATCGACTGGACCTTTGCCAAGGCCCTGCGGGCCTTCGTGCGCGCCGACCCCGA TGTGATCATGGTGGGCGAGATCCGCGACGAGGAAACCGCCAGGACGGCCATCGAGGCCTCATTGACCGGCCACCTCGTAC TTTCGACCCTGCACACCAACAGCGCCCCCGAAACGGTGACCCGGCTGCTCGACATGGGCATGGACCCCTTCAACTTCGCG GACTCGCTGCTGGCGGTGCTGGCACAGCGGCTGGTGCGCCGCCTCTGCACCCAGTGCACCACCAGCAGCCCCGCGAGCCC CGAGAAGGTCGAGGAACTGCTGGCCGACTACATGCATGCCTTCGGCGCGGAGGCCACGCCCGCCGAGCGCGAGGCGGTGC GCGGCGACTGGATCGCACGCCATGGGCACGGCGGCCATCTGCACACCTTCACCAGCACCGGCTGCCCGCATTGCGGCGAT ACGGGCTTCAAGGGCCGTGTGGGCATTCACGAGCTGATGGTGGTGTCCAGGACGCTTCGGCGCCTGGTGCAGAACGGAGC GCGTGCCGAGGAACTGCAGGAAGCGGCGCTGCGCGAAGGCATGCGCACGCTGCGTCAGGACGGTATCGAGAAGGTGCTGG CCGGGCAGACGACCATCGAGGAAGTGCGCGCGACCAGCAACGTGTGA Protein sequence : MSSAEVTTPEQLLTELDAQTRMPIAQIGQTLMSLGMVTAAQLQGGLVQQQLAPTVPLGEMLVRMGLINRAQLQAALVHKM GYPLVNLHLFAPSAEALRKIGHSAAQRLQVMPLMLHEGRLVLALDDPSNRRSAIDEVEFIAQSKVIPVVGKCLDLDGVLH KAYEKLGDPATPRPASFDPMRPLEFDMAGTSELLETLEKEGRSIASTEAPIEQSDNSLVRMINSMILEAHREGASDIHVE SSPGDEKTRIRFRRDGRLYTYLELPSSYRNAVVARIKIMCDLDISEKRKPQDGKINFSKYSPQHRIELRVATIPTSNGLE DVVMRILASAKPIAMNALGLSPRNLAQLTQAVERPYGMVLCVGPTGSGKTTTLHSALMHINTPERKIWTAEDPIEITQAG LRQVQVNPRIDWTFAKALRAFVRADPDVIMVGEIRDEETARTAIEASLTGHLVLSTLHTNSAPETVTRLLDMGMDPFNFA DSLLAVLAQRLVRRLCTQCTTSSPASPEKVEELLADYMHAFGAEATPAEREAVRGDWIARHGHGGHLHTFTSTGCPHCGD TGFKGRVGIHELMVVSRTLRRLVQNGARAEELQEAALREGMRTLRQDGIEKVLAGQTTIEEVRATSNV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 5e-63 | 43 |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 6e-63 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Varpa_4504 | YP_004156782.1 | type II secretion system protein e | VFG0182 | Protein | 6e-60 | 44 |
| Varpa_4504 | YP_004156782.1 | type II secretion system protein e | VFG2048 | Protein | 4e-63 | 43 |
