Gene Information

Name : Varpa_4460 (Varpa_4460)
Accession : YP_004156739.1
Strain : Variovorax paradoxus EPS
Genome accession: NC_014931
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG5485
EC number : -
Position : 4832568 - 4833005 bp
Length : 438 bp
Strand : -
Note : PFAM: protein of unknown function DUF1486; KEGG: bxe:Bxe_B0561 hypothetical protein

DNA sequence :
ATGACCGGGGCCGACCTGCCCACCCTCTACCGAAGCTATATCGCCTGCCTCAACGCGCGCGACTGGGCGAATCTCGACAG
CTTCGTTCACGCGGAGGCGCACCACAACGGCCGGCGCATCGGCCTCGCCGGCTATCGCGCGATGCTGGAGAAGGACTGCG
AAGAGATCCCCGATCTGCACTTCGACATCCGCTTGCTCGTCTGCGATCCACCCCGCATCGCCAGTCGGCTGCAGTTCGAT
TGCTCCCCGAAGGGGACTTTTCTCGGGCTGCCGGTGAACGGCCGGAAGGTCTCGTTCGCCGAGAACGTGTTCTATGAGTT
CCGGGACGAAAGGATCGCAAGCGTCTGGTCCGTCATCGACAAGGCGGCCATCGAGGCTCAACTCGTCGGCGACAGCAGCA
ACAGCGCGGCACCGGAACAAGCAAGGCAATCCCCATGA

Protein sequence :
MTGADLPTLYRSYIACLNARDWANLDSFVHAEAHHNGRRIGLAGYRAMLEKDCEEIPDLHFDIRLLVCDPPRIASRLQFD
CSPKGTFLGLPVNGRKVSFAENVFYEFRDERIASVWSVIDKAAIEAQLVGDSSNSAAPEQARQSP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
PSPTO_1364 NP_791191.1 hypothetical protein Not tested Hrp PAI Protein 8e-36 55
unnamed AAF71511.1 unknown Not tested Hrp PAI Protein 5e-36 55