Gene Information

Name : Varpa_4399 (Varpa_4399)
Accession : YP_004156678.1
Strain : Variovorax paradoxus EPS
Genome accession: NC_014931
Putative virulence/resistance : Virulence
Product : 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG0437
EC number : -
Position : 4769057 - 4769887 bp
Length : 831 bp
Strand : -
Note : KEGG: vap:Vapar_3814 4Fe-4S ferredoxin iron-sulfur binding domain protein

DNA sequence :
ATGATGCAGTGGCTCAAGGACCTGATGGCCCCGGTTTCGCTCCCTCCCCTTCCGGGGGAGGGCTGGGGTGGGGGCACGGC
GGCCTTCATCGAAGCGCGGCATCCAGTAGAAGCGCCGCTGCCCCCACCCCAACCCTCCCCCGGAAGGGGAGGGAGCAATA
CCTCCAAACGCGCGGAGCCCGGCGAAACGCTCGCCAAGCAACTCGCCCTCGTCATCGACCTGAACGTCTGCGTCGGCTGC
CACGCCTGCGTGACCTCGTGCAAGCAATGGAACACCTCCGGCAGCGCCGGCCCGCTTGCCGACGAGCGACCTTACGCCGC
CAACCCGACCGGCACCTTCTTCAACCGCGTGCAGACCTACGAGGCCGGCGCCTTTCCGGCGACCGAGACGGTGCACCTGC
CCAAGAGCTGCCTGCACTGCGAAGACCCGCCCTGTGTGCCCGTGTGTCCGACCGGCGCGAGCTACAAGCGCAAGGAAGAC
GGCATCGTGCTCGTCGACTACGACAAGTGCATCGGCTGCAAGTACTGCGCATGGGCCTGTCCCTACGGCGCGCGCGAGCT
CGATGAAGAACGCCAGGTCATGACCAAGTGCACGCTCTGCGTGGACCGCATCTACGACGAGCTGCTGCCCAAGGAAGACC
GCAAGCCCGCCTGCGTGAAGGCCTGCCCCACGGGCGCGCGCCTCTTCGGTGATGTGAAGGACCCGGACTCCGAGGTGTCG
AAGGCGATCCGCGAACGCGGCGGCTACCAACTGATGCCGGAGTGGGAGACCAACCCGGCCAACCAGTACCTTCCGCGCCG
CATCACGCAATCGACGGACGCGCAGGGGTAA

Protein sequence :
MMQWLKDLMAPVSLPPLPGEGWGGGTAAFIEARHPVEAPLPPPQPSPGRGGSNTSKRAEPGETLAKQLALVIDLNVCVGC
HACVTSCKQWNTSGSAGPLADERPYAANPTGTFFNRVQTYEAGAFPATETVHLPKSCLHCEDPPCVPVCPTGASYKRKED
GIVLVDYDKCIGCKYCAWACPYGARELDEERQVMTKCTLCVDRIYDELLPKEDRKPACVKACPTGARLFGDVKDPDSEVS
KAIRERGGYQLMPEWETNPANQYLPRRITQSTDAQG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ttrB YP_216393.1 tetrathionate reductase complex subunit B Virulence SPI-2 Protein 2e-31 41
ttrB NP_805056.2 tetrathionate reductase subunit B Virulence SPI-2 Protein 2e-31 41
ttrB NP_456142.1 tetrathionate reductase subunit B Virulence SPI-2 Protein 4e-31 41
ttrB NP_460350.1 tetrathionate reductase complex subunit B Virulence SPI-2 Protein 4e-31 41
ttrB CAB37414.1 tetrathionate reductase subunit B (TtrB) Virulence SPI-2 Protein 3e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Varpa_4399 YP_004156678.1 4fe-4S ferredoxin iron-sulfur binding domain-containing protein VFG0486 Protein 2e-31 41